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Institution · Advanced Genomic Technology (United States)

Most cited papers from Advanced Genomic Technology (United States)

Advanced Genomic Technology (United States)

What are the most cited papers from Advanced Genomic Technology (United States)?

The most cited paper from Advanced Genomic Technology (United States) is "VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology" (Zhenjun Hu, Jui‐Hung Hung, Yan Wang et al., 2009), with 189 citations. Next come "Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models" (182) and "Increased microRNA-34c abundance in Alzheimer's disease circulating blood plasma" (149).

Showing 50 of 76 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#Paper
1 VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology Zhenjun Hu, Jui‐Hung Hung, Yan Wang et al. · Nucleic Acids Research Open access 21 May 2009 189
2 Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models Manway Liu, Arthur Liberzon, Sek Won Kong et al. · PLoS Genetics Open access 6 Jun 2007 182
3 Increased microRNA-34c abundance in Alzheimer's disease circulating blood plasma Shephali Bhatnagar, Howard Mark Chertkow, Hyman M. Schipper et al. · Frontiers in Molecular Neuroscience Open access 2014 149
4 On the Security and Privacy of Internet of Things Architectures and Systems Emmanouil Vasilomanolakis, Jörg Daubert, Manisha Luthra et al. Conference paper Sep 2015 146
5 VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies Zhenjun Hu, Yi-Chien Chang, Yan Wang et al. · Nucleic Acids Research Open access 28 May 2013 139
6 RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli Brian P. Anton, Lana Saleh, Jack S. Benner et al. · Proceedings of the National Academy of Sciences Open access 5 Feb 2008 111
7 Chitosan dressing promotes healing in third degree burns in mice: Gene expression analysis shows biphasic effects for rapid tissue regeneration and decreased fibrotic signaling Ruth Baxter, Tianhong Dai, Jess A. Kimball et al. · Journal of Biomedical Materials Research Part A Open access 30 Jul 2012 106
8 Accelerated Postnatal Growth Increases Lipogenic Gene Expression and Adipocyte Size in Low–Birth Weight Mice ELVIRA M. ISGANAITIS, Jose Jimenez-Chillaron, Melissa Woo et al. · Diabetes Open access 10 Feb 2009 87
9 Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’ Mark A. Campbell, Patrick Chain, Hongyue Dang et al. · FEMS Microbiology Ecology 9 Dec 2010 80
10 VisANT 3.0: new modules for pathway visualization, editing, prediction and construction Zhenjun Hu, David Ng, Takuji Yamada et al. · Nucleic Acids Research Open access 24 Jun 2007 77
11 A distal lung organoid model to study interstitial lung disease, viral infection and human lung development Ivana Matković, Remy T. Schneider, Tania Ahalya Thimraj et al. · Nature Protocols Open access 10 May 2023 67
12 Label-free microarray imaging for direct detection of DNA hybridization and single-nucleotide mismatches Emre Özkumur, Sunmin Ahn, Ayça Yalcın et al. · Biosensors and Bioelectronics Open access 5 Jan 2010 64
13 A COMPARISON OF GENE EXPRESSION IN MURINE CARDIAC ALLOGRAFTS AND ISOGRAFTS BY MEANS DNA MICROARRAY ANALYSIS1 Akio Saiura, Chikage Mataki, Takeshi Murakami et al. · Transplantation Jul 2001 61
14 Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis Brian P. Anton, Susan P. Russell, Jason Vertrees et al. · Nucleic Acids Research Open access 14 May 2010 52
15 ASCL1 and RET expression defines a clinically relevant subgroup of lung adenocarcinoma characterized by neuroendocrine differentiation Farhad Kosari, Cristiane M. Ida, M-C Aubry et al. · Oncogene Open access 16 Sep 2013 48
16 In-Home Activity Recognition: Bayesian Inference for Hidden Markov Models Francisco Javier Ordóñez, Gwenn Englebienne, Paula de Toledo et al. · IEEE Pervasive Computing Jul 2014 48
17 Analysis of breast cancer progression using principal component analysis and clustering Gabriela Alexe, Gul S. Dalgin, Shridar Ganesan et al. · Journal of Biosciences Aug 2007 44
18 Portraits of breast cancer progression Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld et al. · BMC Bioinformatics Open access 6 Aug 2007 41
19 Biological Process Linkage Networks Dikla Dotan-Cohen, Stan Letovsky, Avraham A. Melkman et al. · PLoS ONE Open access 22 Apr 2009 39
20 Phylogenetic detection of conserved gene clusters in microbial genomes Yu Zheng, Brian P. Anton, Richard J. Roberts et al. · BMC Bioinformatics Open access 3 Oct 2005 37
21 Triplet repeat length bias and variation in the human transcriptome Michael N. Molla, Arthur L. Delcher, Shamil R. Sunyaev et al. · Proceedings of the National Academy of Sciences Open access 18 Sep 2009 36
22 Expression of an estrogen-regulated variant transcript of the peroxisomal branched chain fatty acid oxidase ACOX2 in breast carcinomas Sunniva Stordal Bjørklund, Vessela Nedelcheva Kristensen, Michael Seiler et al. · BMC Cancer Open access 16 Jul 2015 36
23 Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0 Brian R. Granger, Yi-Chien Chang, Yan Wang et al. · PLoS Computational Biology Open access 15 Apr 2016 35
24 A computational framework for optimal masking in the synthesis of oligonucleotide microarrays Simon Kasif · Nucleic Acids Research Open access 15 Oct 2002 34
25 Preanalytical Stability of Adrenocorticotropic Hormone Depends on Time to Centrifugation Rather than Temperature Nicole Reisch, Martín Reincke, Martin Bidlingmaier · Clinical Chemistry 26 Jan 2007 34
26 Decreased expression of thioredoxin interacting protein mRNA in inflamed colonic mucosa in patients with ulcerative colitis Yasuo Takahashi, Hideki Masuda, Yukimoto Ishii et al. · Oncology Reports Open access Sep 2007 34
27 Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes Soohyun Lee, Isaac S. Kohane, Simon Kasif · BMC Genomics Open access 27 Nov 2005 33
28 Control of Histone H3 Lysine 9 (H3K9) Methylation State via Cooperative Two-step Demethylation by Jumonji Domain Containing 1A (JMJD1A) Homodimer Satoshi Goda, Takayuki Isagawa, Yoko Chikaoka et al. · Journal of Biological Chemistry Open access 9 Nov 2013 31
29 Myelin protein zero mutation His39Pro: hereditary motor and sensory neuropathy with variable onset, hearing loss, restless legs and multiple sclerosis Dean H. Kilfoyle · Journal of Neurology Neurosurgery & Psychiatry Open access 18 May 2006 30
30 Hierarchical tree snipping: clustering guided by prior knowledge Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif · Bioinformatics 7 Nov 2007 27
31 High-precision high-coverage functional inference from integrated data sources Bolan Linghu, Evan S. Snitkin, Dustin T. Holloway et al. · BMC Bioinformatics Open access 25 Feb 2008 27
32 Ammonia‐dependent differential regulation of the gene cluster that encodes ammonia monooxygenase in Nitrosococcus oceani ATCC 19707 Amal F. El Sheikh, Martin Gunter Klotz · Environmental Microbiology 30 Sep 2008 24
33 A Predictive Phosphorylation Signature of Lung Cancer Chang‐Jiun Wu, Tianxi Cai, Klarisa Rikova et al. · PLoS ONE Open access 24 Nov 2009 18
34 Quantifying DNA–protein binding specificities by using oligonucleotide mass tags and mass spectroscopy Lingang Zhang, Simon Kasif, and Charles R. Cantor · Proceedings of the National Academy of Sciences Open access 21 Feb 2007 16
35 Human respiratory airway progenitors derived from pluripotent cells generate alveolar epithelial cells and model pulmonary fibrosis Mikael G. Pezet, J Torres, Tania Ahalya Thimraj et al. · Nature Biotechnology Open access 24 Feb 2025 15
36 Comparative Pathway Analyzer—a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms Sebastian B. Oehm, David Gilbert, Andreas Tauch et al. · Nucleic Acids Research Open access 6 Jun 2008 15
37 Functional characterization of breast cancer using pathway profiles Feng Tian, Yajie Wang, Michael Seiler et al. · BMC Medical Genomics Open access 21 Jul 2014 14
38 Functional analysis of rare genetic variants in complement factor I in advanced age-related macular degeneration Anuja Java, Nicola Pozzi, Molly C. Schroeder et al. · Human Molecular Genetics Open access 5 May 2022 13
39 Live birth following serial vitrification of embryos and PGD for fragile X syndrome in a patient with the premutation and decreased ovarian reserve Dan Nayot, Jin Tae Chung, Weon‐Young Son et al. · Journal of Assisted Reproduction and Genetics Open access 5 Sep 2013 13
40 Sex-specific role of high-fat diet and stress on behavior, energy metabolism, and the ventromedial hypothalamus Sanutha Shetty, Samuel J. Duesman, Sanil Patel et al. · Biology of Sex Differences Open access 15 Jul 2024 11
41 Over-expression of miR-34c leads to early-life visceral fat accumulation and insulin resistance Philip H. Jones, Brian Deng, Jessica Winkler et al. · Scientific Reports Open access 25 Sep 2019 11
42 Igf1 and Pacap rescue cerebellar granule neurons from apoptosis via a common transcriptional program Barbara Maino, Velia D’Agata, Cinzia Severini et al. · Cell Death Discovery Open access 7 Sep 2015 11
43 An efficient q-RTM algorithm based on local differentiation operators Wenyi Hu, Tong Zhou, Jieyuan Ning Conference paper Sep 2016 10
44 Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing Andrew M. Overmiller, Akihiko Uchiyama, Emma Hope et al. · JCI Insight Open access 31 Oct 2024 9
45 Environmental Determinants of Ferroptosis in Cancer Yasaman Setayeshpour, Yunji Lee, Jen‐Tsan Chi · Cancers Open access 29 Jul 2023 7
46 Bioinformatics profiling and expressional studies of microRNAs in root, stem and leaf of the bioenergy plant switchgrass (Panicum virgatum L.) under drought stress Muhammad Younas Khan Barozai, Zhujia Ye, Sasikiran Reddy Sangireddy et al. · Agri Gene Open access 21 Feb 2018 7
47 Simultaneous CO 2 removal from biomass conversion product gas and carbon nanotube formation via catalytic chemical vapour deposition Aida Fuente-Cuesta, Cristian Daniel Savaniu, George M. Carins et al. · Sustainable Energy & Fuels 2019 6
48 High-aspect-ratio Microdrilling with UV Laser Ablation. I Hirofumi Hidai, Sho Itoh, Hitoshi TOKURA et al. · Journal of the Japan Society for Precision Engineering Open access 2010 6
49 Multi-Energy Simulation of a Smart Grid with Optimal Local Demand and Supply Management Christian Kuschel, Harald Köstler, Ulrich Rüde · Smart Grid and Renewable Energy Open access 2015 6
50 ROBUST GENE NETWORK ANALYSIS REVEALS ALTERATION OF THE STAT5a NETWORK AS A HALLMARK OF PROSTATE CANCER Anupama Reddy, Caihong Huang, Huiqing Liu et al. Conference paperOpen access Jul 2010 6

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.