Most cited papers from Amyris (United States)

Amyris (United States)

What are the most cited papers from Amyris (United States)?

The most cited paper from Amyris (United States) is "Production of the antimalarial drug precursor artemisinic acid in engineered yeast" (Dae‐Kyun Ro, Eric M. Paradise, Mario Ouellet et al., 2006), with 2,875 citations. Next come "High-level semi-synthetic production of the potent antimalarial artemisinin" (2,122) and "Rewriting yeast central carbon metabolism for industrial isoprenoid production" (741).

Published TypeFieldAccessCitations

Showing 50 of 60 papers. Every paper with more than 30 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	Production of the antimalarial drug precursor artemisinic acid in engineered yeast Dae‐Kyun Ro, Eric M. Paradise, Mario Ouellet et al. · Nature	13 Apr 2006	2,875
2	High-level semi-synthetic production of the potent antimalarial artemisinin Christopher J. Paddon et al. · Nature Open access	Apr 2013	2,122
3	Rewriting yeast central carbon metabolism for industrial isoprenoid production Adam L. Meadows et al. · Nature	Sep 2016	741
4	Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin Patrick J. Westfall, Douglas J. Pitera, Jacob R. Lenihan et al. · Proceedings of the National Academy of Sciences Open access	12 Jan 2012	739
5	Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development Christopher J. Paddon, Jay D. Keasling · Nature Reviews Microbiology Review	Apr 2014	689
6	High-throughput injection with microfluidics using picoinjectors Adam R. Abate, Tony Hung, Pascaline Mary et al. · Proceedings of the National Academy of Sciences Open access	20 Oct 2010	508
7	Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli Douglas J. Pitera, Christopher J. Paddon, Jack D. Newman et al. · Metabolic Engineering	29 Nov 2006	451
8	Complete Reconstitution of a Highly Reducing Iterative Polyketide Synthase Magali Suzanne, Jesse W.-H. Li, Jin Wook Choi et al. · Science Open access	22 Oct 2009	393
9	High-Level Production of Amorpha-4,11-Diene, a Precursor of the Antimalarial Agent Artemisinin, in Escherichia coli Hiroko Tsuruta, Christopher J. Paddon, Diana G. Eng et al. · PLoS ONE Open access	14 Feb 2009	370
10	Methylerythritol Phosphate Pathway of Isoprenoid Biosynthesis Lishan Zhao, Wei‐chen Chang, Youli Xiao et al. · Annual Review of Biochemistry ReviewOpen access	2 Jun 2013	359
11	Efficient Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas Andrew A. Horwitz, Jessica M. Walter, Max G. Schubert et al. · Cell Systems Open access	12 Mar 2015	311
12	De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology Jurgen F. Nijkamp, Marcel van den Broek, Erwin Datema et al. · Microbial Cell Factories Open access	26 Mar 2012	304
13	Sugarcane (Saccharum X officinarum): A Reference Study for the Regulation of Genetically Modified Cultivars in Brazil Adriana Cheavegatti-Gianotto et al. · Tropical Plant Biology Open access	21 Feb 2011	301
14	Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene Jennifer R. Anthony, Larry C. Anthony, Farnaz F. Nowroozi et al. · Metabolic Engineering	13 Aug 2008	295
15	Rapid and Reliable DNA Assembly via Ligase Cycling Reaction Stefan de Kok, Leslie H. Stanton, Todd Slaby et al. · ACS Synthetic Biology	9 Jan 2014	256
16	Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri Tammi Vesth et al. · Nature Genetics Open access	17 Oct 2018	239
17	Recent advances in synthetic biology for engineering isoprenoid production in yeast Claudia E. Vickers, Thomas C. Williams, Bingyin Peng et al. · Current Opinion in Chemical Biology Review	15 Jun 2017	209
18	Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid Dae‐Kyun Ro, Mario Ouellet, Eric M. Paradise et al. · BMC Biotechnology Open access	4 Nov 2008	202
19	Identification of Isopentenol Biosynthetic Genes from Bacillus subtilis by a Screening Method Based on Isoprenoid Precursor Toxicity Sydnor T. Withers, Shayin S. Gottlieb, Bonny Lieu et al. · Applied and Environmental Microbiology Open access	11 Aug 2007	194
20	A Novel Semi-biosynthetic Route for Artemisinin Production Using Engineered Substrate-Promiscuous P450 BM3 Jeffrey A. Dietrich, Yasuo Yoshikuni, Karl J. Fisher et al. · ACS Chemical Biology Open access	9 Mar 2009	187
21	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data Scott DiGuistini, Nancy Liao, Darren Platt et al. · Genome biology Open access	11 Sep 2009	159
22	Grand Research Challenges for Sustainable Industrial Biotechnology Adrie J. J. Straathof, A. Wahl, Kirsten R. Benjamin et al. · Trends in biotechnology ReviewOpen access	May 2019	153
23	Developing fermentative terpenoid production for commercial usage Michael D. Leavell, Derek J. McPhee, Christopher J. Paddon · Current Opinion in Biotechnology Review	23 Dec 2015	129
24	Microbial production of isoprenoids Sunil S. Chandran, James T. Kealey, Christopher D. Reeves · Process Biochemistry	13 Jun 2011	127
25	Evolutionary instability of CUG-Leu in the genetic code of budding yeasts Tadeusz Krassowski, Aisling Y. Coughlan, Xing‐Xing Shen et al. · Nature Communications Open access	8 May 2018	116
26	Engineering Acetyl Coenzyme A Supply: Functional Expression of a Bacterial Pyruvate Dehydrogenase Complex in the Cytosol of Saccharomyces cerevisiae Barbara U. Kozak, Harmen M. van Rossum, Marijke A. H. Luttik et al. · mBio Open access	22 Oct 2014	113
27	Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases by alternative pathways for cytosolic acetyl-CoA synthesis Barbara U. Kozak, Harmen M. van Rossum, Kirsten R. Benjamin et al. · Metabolic Engineering Open access	21 Nov 2013	104
28	Approaches and Recent Developments for the Commercial Production of Semi-synthetic Artemisinin Stephanie H. Kung, Sean Lund, Abhishek Murarka et al. · Frontiers in Plant Science Open access	31 Jan 2018	100
29	Determination of the extent of phosphopantetheinylation of polyketide synthases expressed in Escherichia coli and Saccharomyces cerevisiae Ka Kit Michael Lee, Nancy A. Da Silva, James T. Kealey · Analytical Biochemistry	12 Jul 2009	97
30	A self-amplifying RNA vaccine against COVID-19 with long-term room-temperature stability Emily A. Voigt, Alana Gerhardt, Derek Hanson et al. · npj Vaccines Open access	2 Nov 2022	92
31	Sharing Structure and Function in Biological Design with SBOL 2.0 Nicholas Roehner, Jacob Beal, Kevin P. Clancy et al. · ACS Synthetic Biology	25 Apr 2016	89
32	Developing an industrial artemisinic acid fermentation process to support the cost‐effective production of antimalarial artemisinin‐based combination therapies Jacob R. Lenihan, Hiroko Tsuruta, Don Diola et al. · Biotechnology Progress	Sep 2008	85
33	High-throughput screening for improved microbial cell factories, perspective and promise Michael D. Leavell, Amoolya H. Singh, Benjamin Kaufmann-Malaga · Current Opinion in Biotechnology ReviewOpen access	9 Sep 2019	79
34	Free mycolic acid accumulation in the cell wall of the mce1 operon mutant strain of Mycobacterium tuberculosis Sally A. Cantrell, Michael D. Leavell, Olivera Marjanovic et al. · The Journal of Microbiology	14 Sep 2013	74
35	Industrial fermentation of renewable diesel fuels Patrick J. Westfall, Timothy S. Gardner · Current Opinion in Biotechnology Review	26 May 2011	71
36	Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA Ruchika Sachdev, Maria Hondele, Miriam Linsenmeier et al. · eLife Open access	16 Jan 2019	70
37	Use of pantothenate as a metabolic switch increases the genetic stability of farnesene producing Saccharomyces cerevisiae Celeste M. Sandoval, Marites Ayson, Nathan A. Moss et al. · Metabolic Engineering	27 Jul 2014	68
38	Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0 Robert Sidney Cox et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics Open access	19 Mar 2018	68
39	Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae James Kirby, Kevin Dietzel, Gale Wichmann et al. · Metabolic Engineering Open access	27 Oct 2016	67
40	Low-Cost, High-Throughput Sequencing of DNA Assemblies Using a Highly Multiplexed Nextera Process Elaine B. Shapland, Victor F. Holmes, Christopher D. Reeves et al. · ACS Synthetic Biology	26 Apr 2015	65
41	High-throughput screening for high-efficiency small-molecule biosynthesis Matthew Rienzo, Shaina J. Jackson, Lawrence K. Chao et al. · Metabolic Engineering Open access	2 Oct 2020	54
42	Developing Commercial Production of Semi-Synthetic Artemisinin, and of β-Farnesene, an Isoprenoid Produced by Fermentation of Brazilian Sugar Kirsten R. Benjamin, Iris R. Silva, João P. Cherubim et al. · Journal of the Brazilian Chemical Society Open access	2016	50
43	Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism Yinjie Tang, Héctor García Martín, Paramvir Dehal et al. · Biotechnology and Bioengineering	24 Sep 2008	49
44	The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering Joan Hérisson, Thomas Duigou, Melchior Du et al. · Nature Communications Open access	29 Aug 2022	48
45	Synthetic biology: from hype to impact Timothy S. Gardner · Trends in biotechnology	16 Feb 2013	47
46	Thermal stability of ionic liquids in nitrogen and air environments Yong Ping Huang, Zhichao Chen, Jacob M. Crosthwaite et al. · The Journal of Chemical Thermodynamics Open access	25 Jun 2021	44
47	Comparative study on oxidative treatments of NAPL containing chlorinated ethanes and ethenes using hydrogen peroxide and persulfate in soils Saebom Ko, Michelle L. Crimi, Bruce K. Marvin et al. · Journal of Environmental Management	30 May 2012	44
48	Communicating Structure and Function in Synthetic Biology Diagrams Jacob Beal et al. · ACS Synthetic Biology Open access	26 Jul 2019	43
49	Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene Avinash C. Srivastava, Savita Ganesan, Ihab O. Ismail et al. · BMC Plant Biology Open access	20 Jan 2009	43
50	Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication Sebastian Theobald, Tammi Vesth, Jakob K. H. Rendsvig et al. · Scientific Reports Open access	12 Dec 2018	42

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.