Institution · Bio-Prodict (Netherlands)
Most cited papers from Bio-Prodict (Netherlands)
What are the most cited papers from Bio-Prodict (Netherlands)?
The most cited paper from Bio-Prodict (Netherlands) is "Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces" (Hanka Venselaar, Tim AH te Beek, Remko K. P. Kuipers et al., 2010), with 1,205 citations. Next come "GPCRdb: an information system for G protein-coupled receptors" (1,098) and "A series of PDB-related databanks for everyday needs" (1,026).
Showing 50 of 50 papers. Every paper is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces Hanka Venselaar, Tim AH te Beek, Remko K. P. Kuipers et al. · BMC Bioinformatics | 8 Nov 2010 | 1,205 |
| 2 | GPCRdb: an information system for G protein-coupled receptors Vignir Ísberg, Stefan Mordalski, Christian Munk et al. · Nucleic Acids Research | 17 Nov 2015 | 1,098 |
| 3 | A series of PDB-related databanks for everyday needs Wouter G. Touw, Coos A. B. Baakman, Jon E. Black et al. · Nucleic Acids Research | 28 Oct 2014 | 1,026 |
| 4 | Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications Fabian Steffen‐Munsberg, Clare F. Vickers, Hannes Kohls et al. · Biotechnology Advances | 7 Jan 2015 | 236 |
| 5 | 3DM: Systematic analysis of heterogeneous superfamily data to discover protein functionalities Remko K. P. Kuipers, Henk-Jan Joosten, Willem J. H. van Berkel et al. · Proteins Structure Function and Bioinformatics | 2010 | 149 |
| 6 | The α/β‐Hydrolase Fold 3DM Database (ABHDB) as a Tool for Protein Engineering Robert Kourist, Helge Jochens, Sebastian Bartsch et al. · ChemBioChem | 6 Jul 2010 | 145 |
| 7 | nanoDSF as screening tool for enzyme libraries and biotechnology development Anders O. Magnusson, Anna Szekrényi, Henk‐Jan Joosten et al. · FEBS Journal | 10 Nov 2018 | 143 |
| 8 | Functional analysis of genetic variants in the high-risk breast cancer susceptibility gene PALB2 Rick A.C.M. Boonen, Amélie Rodrigue, Chantal Stoepker et al. · Nature Communications | 22 Nov 2019 | 65 |
| 9 | Increasing the thermostability of sucrose phosphorylase by a combination of sequence- and structure-based mutagenesis An Cerdobbel, Karel De Winter, Dirk Aerts et al. · Protein Engineering Design and Selection | 6 Sep 2011 | 60 |
| 10 | Breast cancer risks associated with missense variants in breast cancer susceptibility genes Leila Dorling et al. · Genome Medicine | 18 May 2022 | 59 |
| 11 | Functional Analysis Identifies Damaging CHEK2 Missense Variants Associated with Increased Cancer Risk Rick A.C.M. Boonen, Wouter W. Wiegant, Nandi Celosse et al. · Cancer Research | 13 Dec 2021 | 57 |
| 12 | Switch in Cofactor Specificity of a Baeyer–Villiger Monooxygenase Andy Beier, Sven Bordewick, Maika Genz et al. · ChemBioChem | 13 Oct 2016 | 56 |
| 13 | Drug design for ever, from hype to hope Gavin M. Seddon, Valère Lounnas, Ross McGuire et al. · Journal of Computer-Aided Molecular Design | 2012 | 56 |
| 14 | Engineering the Amine Transaminase from Vibrio fluvialis towards Branched‐Chain Substrates Maika Genz, Okke Melse, Sandy Schmidt et al. · ChemCatChem | 22 Aug 2016 | 55 |
| 15 | A structural classification of carbohydrate epimerases: From mechanistic insights to practical applications Stevie Van Overtveldt, Tom Verhaeghe, Henk‐Jan Joosten et al. · Biotechnology Advances | 25 Oct 2015 | 55 |
| 16 | Two Subtle Amino Acid Changes in a Transaminase Substantially Enhance or Invert Enantiopreference in Cascade Syntheses Lilly Skalden, Christin Peters, Jonathan Dickerhoff et al. · ChemBioChem | 20 Mar 2015 | 54 |
| 17 | Complex phenotypes associated with STIM1 mutations in both coiled coil and EF-hand domains Elizabeth A. Harris, U. Burki, Chiara Marini‐Bettolo et al. · Neuromuscular Disorders | 4 May 2017 | 49 |
| 18 | Complete Switch of Reaction Specificity of an Aldolase by Directed Evolution In Vitro: Synthesis of Generic Aliphatic Aldol Products Sebastian Junker, Raquel Roldán, Henk‐Jan Joosten et al. · Angewandte Chemie International Edition | 8 Jun 2018 | 42 |
| 19 | Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily Elisa Lanfranchi, Tea Pavkov‐Keller, Eva-Maria Koehler et al. · Scientific Reports | 3 May 2017 | 37 |
| 20 | Alteration of the Donor/Acceptor Spectrum of the (S)-Amine Transaminase from Vibrio fluvialis Maika Genz, Clare F. Vickers, Tom van den Bergh et al. · International Journal of Molecular Sciences | 11 Nov 2015 | 37 |
| 21 | Digenic inheritance involving a muscle-specific protein kinase and the giant titin protein causes a skeletal muscle myopathy Ana Töpf et al. · Nature Genetics | Mar 2024 | 36 |
| 22 | Consensus engineering of sucrose phosphorylase: The outcome reflects the sequence input Dirk Aerts, Tom Verhaeghe, Henk‐Jan Joosten et al. · Biotechnology and Bioengineering | 24 Apr 2013 | 35 |
| 23 | Recessive variants of MuSK are associated with late onset CMS and predominant limb girdle weakness David J Owen et al. · American Journal of Medical Genetics Part A | 28 Apr 2018 | 34 |
| 24 | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity Barbara Danneels, Magali Tanghe, Henk‐Jan Joosten et al. · PLoS ONE | 31 May 2017 | 33 |
| 25 | Engineering Thermostability in Artificial Metalloenzymes to Increase Catalytic Activity Megan V. Doble, Lorenz Obrecht, Henk‐Jan Joosten et al. · ACS Catalysis | 8 Mar 2021 | 32 |
| 26 | Going to extremes – a metagenomic journey into the dark matter of life Arnthór Aevarsson et al. · FEMS Microbiology Letters | Jun 2021 | 30 |
| 27 | Structure-function relationships in NDP-sugar active SDR enzymes: Fingerprints for functional annotation and enzyme engineering Matthieu Da Costa, Ophelia Gevaert, Stevie Van Overtveldt et al. · Biotechnology Advances | 9 Feb 2021 | 30 |
| 28 | Simultaneous Use of in Silico Design and a Correlated Mutation Network as a Tool To Efficiently Guide Enzyme Engineering Alberto Nobili, Yifeng Tao, Ioannis V. Pavlidis et al. · ChemBioChem | 25 Feb 2015 | 29 |
| 29 | Novel tools for extraction and validation of disease-related mutations applied to fabry disease Remko K. P. Kuipers, Tom van den Bergh, Henk‐Jan Joosten et al. · Human Mutation | 13 Jul 2010 | 22 |
| 30 | Understanding structure-guided variant effect predictions using 3D convolutional neural networks Gayatri Ramakrishnan, Coos A. B. Baakman, Stephan Heijl et al. · Frontiers in Molecular Biosciences | 5 Jul 2023 | 17 |
| 31 | Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcus furiosus Phosphoglucose Isomerase Kalyanasundaram Subramanian, Karolina Mitusińska, John Raedts et al. · Biomolecules | 31 May 2019 | 16 |
| 32 | NewProt – a protein engineering portal Andreas Schwarte, Maika Genz, Lilly Skalden et al. · Protein Engineering Design and Selection | 13 Apr 2017 | 13 |
| 33 | CorNet: Assigning function to networks of co-evolving residues by automated literature mining Tom van den Bergh, Giorgio E. Tamò, Alberto Nobili et al. · PLoS ONE | 18 May 2017 | 12 |
| 34 | Navigating the Sequence-Function Landscape: AI-Driven Discovery of Unseen and Synergistic Mutations in an Amine Transaminase Konstantin F. G. Weigmann, Stephan Heijl, Bas Vroling et al. · ACS Catalysis | 17 Aug 2025 | 10 |
| 35 | Determinants of the Nucleotide Specificity in the Carbohydrate Epimerase Family 1 Stevie Van Overtveldt, Matthieu Da Costa, Ophelia Gevaert et al. · Biotechnology Journal | 6 Aug 2020 | 10 |
| 36 | CPR-C4 is a highly conserved novel protease from the Candidate Phyla Radiation with remote structural homology to human vasohibins Katy A S Cornish, Joanna Lange, Arnthór Aevarsson et al. · Journal of Biological Chemistry | 8 Apr 2022 | 9 |
| 37 | Facilities that make the PDB data collection more powerful Joanna Lange, Coos A. B. Baakman, Arthur M. A. Pistorius et al. · Protein Science | 14 Nov 2019 | 9 |
| 38 | Beyond rational—biosensor-guided isolation of 100 independently evolved bacterial strain variants and comparative analysis of their genomes Philipp T. Baumann, Michael Dal Molin, Hannah Aring et al. · BMC Biology | 4 Sep 2023 | 7 |
| 39 | AmiP from hyperthermophilic Thermus parvatiensis prophage is a thermoactive and ultrathermostable peptidoglycan lytic amidase Andrius Jasilionis, Magdalena Płotka, Lei Wang et al. · Protein Science | Feb 2023 | 6 |
| 40 | Mind the gap: preventing circularity in missense variant prediction Stephan Heijl, Bas Vroling, Tom van den Bergh et al. · bioRxiv (Cold Spring Harbor Laboratory) | 7 May 2020 | 6 |
| 41 | Bioinformatic analysis of fold-type III PLP-dependent enzymes discovers multimeric racemases Anders M. Knight, Alberto Nobili, Tom van den Bergh et al. · Applied Microbiology and Biotechnology | 27 Oct 2016 | 6 |
| 42 | The Conversion of UDP‐Glc to UDP‐Man: In Silico and Biochemical Exploration To Improve the Catalytic Efficiency of CDP‐Tyvelose C2‐Epimerases Ulrike Vogel, Matthieu Da Costa, Carlos Alvarez Quispe et al. · ChemBioChem | 20 Sep 2023 | 4 |
| 43 | The future of HOPE: what can and cannot be predicted about the molecular effects of a disease causing point mutation in a protein? Francesca Camilli, Annika Borrmann, Shima Gholizadeh et al. · EMBnet journal | 18 May 2011 | 4 |
| 44 | The Future of Protein Secondary Structure Prediction Was Invented by Oleg Ptitsyn Daniel T. Rademaker, Jarek M. van Dijk, Willem Titulaer et al. · Biomolecules | 16 Jun 2020 | 3 |
| 45 | #TAIA2012 Fernando Díaz, Susan Dumais, Kira Radinsky et al. · ACM SIGIR Forum | 21 Dec 2012 | 1 |
| 46 | Digenic inheritance as a causative mechanism of skeletal myopathy Ana Töpf et al. · Journal of the Neurological Sciences | Dec 2025 | 0 |
| 47 | Site-saturation functional screens identify PALB2 missense variants associated with increased breast cancer risk Rick A.C.M. Boonen et al. · Nature Communications | 19 Jan 2026 | 0 |
| 48 | Interpretable and Physics-Supported Machine Learning Model for Sound Transmission Loss Analysis Barbara Zaparoli Cunha, Mohamed Najib Ichchou, Christophe Droz et al. · HAL (Le Centre pour la Communication Scientifique Directe) | 15 Sep 2022 | 0 |
| 49 | Fahrzeugkomponenten in Echtzeit überwachen Stéphane Foulard, Stephan Rinderknecht, Rafael Fietzek · atp magazin | 23 Jun 2017 | 0 |
| 50 | Massive protein superfamily data integration applied to smart library design Henk‐Jan Joosten · New Biotechnology | Jul 2014 | 0 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.