Most cited papers from Biobase (Germany)

Biobase (Germany)

What are the most cited papers from Biobase (Germany)?

The most cited paper from Biobase (Germany) is "TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes" (Volker Matys, 2005), with 2,250 citations. Next come "TRANSFAC(R): transcriptional regulation, from patterns to profiles" (2,023) and "MATCHTM: a tool for searching transcription factor binding sites in DNA sequences" (1,122).

Published TypeFieldAccessCitations

Showing 50 of 59 papers. Every paper with more than 72 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes Volker Matys · Nucleic Acids Research Open access	28 Dec 2005	2,250
2	TRANSFAC(R): transcriptional regulation, from patterns to profiles Volker Matys · Nucleic Acids Research Open access	2003	2,023
3	MATCHTM: a tool for searching transcription factor binding sites in DNA sequences Alexander E Kel · Nucleic Acids Research Open access	25 Jun 2003	1,122
4	New insights into the structure and composition of technical lignins: a comparative characterisation study Sandra Constant, Hans Wienk, Augustinus E. Frissen et al. · Green Chemistry Open access	2016	884
5	Towards industrial products from microalgae Jesús Ruiz, Giuseppe Olivieri, Jeroen H. de Vree et al. · Energy & Environmental Science Open access	2016	671
6	Bulk chemicals from biomass Jacco van Haveren, Elinor L. Scott, Johan P. M. Sanders · Biofuels Bioproducts and Biorefining Open access	19 Dec 2007	513
7	Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower Kerstin Kaufmann, José M. Muiño, Ruy Jáuregui et al. · PLoS Biology Open access	16 Apr 2009	467
8	Integrated lignocellulosic value chains in a growing bioeconomy: Status quo and perspectives Nicolaus Dahmen, Iris M. Lewandowski, Susanne Zibek et al. · GCB Bioenergy Open access	12 Dec 2018	451
9	Supramolecular nanofibrillar hydrogels as highly stretchable, elastic and sensitive ionic sensors Xiaohui Zhang, Nannan Sheng, Linan Wang et al. · Materials Horizons	23 Oct 2018	413
10	A meta-analysis on biochar's effects on soil water properties – New insights and future research challenges Ifeoma Gloria Edeh, Ondřej Mašek, Wolfram Buss · The Science of The Total Environment ReviewOpen access	22 Jan 2020	363
11	Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms Thomas Heinemeyer, Xuwen Chen, Holger Karas et al. · Nucleic Acids Research Open access	1999	312
12	Deoxygenation of biobased molecules by decarboxylation and decarbonylation – a review on the role of heterogeneous, homogeneous and bio-catalysis Gwen J. S. Dawes, Elinor L. Scott, Jérôme Le Nôtre et al. · Green Chemistry Open access	2015	212
13	Analysis of Fatty Acid Content and Composition in Microalgae Guido Breuer, Wendy A. C. Evers, Jeroen H. de Vree et al. · Journal of Visualized Experiments Open access	Oct 2013	207
14	P-Match: transcription factor binding site search by combining patterns and weight matrices Dmitry S. Chekmenev, C. Haid, Alexander E Kel · Nucleic Acids Research Open access	26 Jun 2005	205
15	Marginal Agricultural Land Low-Input Systems for Biomass Production Moritz von Cossel et al. · Energies Open access	14 Aug 2019	187
16	Aberrant intestinal expression and allelic variants of mucin genes associated with inflammatory bowel disease Christoph Moehle, Nikolaus Ackermann, Thomas Langmann et al. · Journal of Molecular Medicine	20 Oct 2006	177
17	Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors Alexander E Kel, Olga V Kel-Margoulis, Peggy Farnham et al. · Journal of Molecular Biology	May 2001	176
18	Downstream processing of Isochrysis galbana: a step towards microalgal biorefinery Bienvenida Gilbert‐López, Jose Antonio Mendiola, Javier Fontecha et al. · Green Chemistry Open access	2015	174
19	TRANSPATH(R): an information resource for storing and visualizing signaling pathways and their pathological aberrations Mathias Krull · Nucleic Acids Research Open access	28 Dec 2005	166
20	Recent advances of metabolic engineering strategies in natural isoprenoid production using cell factories Meijie Li, Feifei Hou, Tong Wu et al. · Natural Product Reports	10 May 2019	165
21	Habituation and adaptation to odors in humans Roberto Pellegrino, Charlotte Sinding, René A. de Wijk et al. · Physiology & Behavior Open access	10 Apr 2017	163
22	Structure–performance relations of molybdenum- and tungsten carbide catalysts for deoxygenation Daniel R. Stellwagen, Johannes Hendrik Bitter · Green Chemistry Open access	23 Oct 2014	153
23	A flyweight and superelastic graphene aerogel as a high-capacity adsorbent and highly sensitive pressure sensor Jianliang Xiao, Yeqiang Tan, Yihu Song et al. · Journal of Materials Chemistry A	2018	142
24	Polyurethane microcapsules for self-healing paint coatings Eunjoo Koh, Nam‐Kyun Kim, Jihoon Shin et al. · RSC Advances	2014	140
25	TRANSCompel(R): a database on composite regulatory elements in eukaryotic genes Olga V Kel-Margoulis · Nucleic Acids Research Open access	2002	138
26	Bifurcation analysis of the regulatory modules of the mammalian G1/S transition Maciej Swat, Alexander E Kel, Hanspeter Herzel · Bioinformatics	Jul 2004	137
27	Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation N.A.L. Flahaut, Anne Wiersma, Bert van de Bunt et al. · Applied Microbiology and Biotechnology Open access	22 Aug 2013	135
28	Micron-sized monocrystalline LiNi 1/3 Co 1/3 Mn 1/3 O 2 as high-volumetric-energy-density cathode for lithium-ion batteries Feng Li, Linglong Kong, Yan-Yun Sun et al. · Journal of Materials Chemistry A	2018	130
29	Inhibition of Glycolytic Enzymes Mediated by Pharmacologically Activated p53 Joanna E Zawacka-Pankau, Vera V. Grinkevich, Sabine Hünten et al. · Journal of Biological Chemistry Open access	23 Aug 2011	129
30	Effects on Crop Development, Yields and Chemical Composition of Celeriac (Apium graveolens L. var. rapaceum) Cultivated Underneath an Agrivoltaic System Axel Weselek, Andrea Bauerle, Sabine Zikeli et al. · Agronomy Open access	10 Apr 2021	123
31	Ablation of Key Oncogenic Pathways by RITA-Reactivated p53 Is Required for Efficient Apoptosis Vera V. Grinkevich, Fedor Nikulenkov, Yao Shi et al. · Cancer Cell Open access	May 2009	123
32	Hydrothermal carbonization coupled with anaerobic digestion for the valorization of the organic fraction of municipal solid waste Michela Lucian, Maurizio Volpe, Fabio Merzari et al. · Bioresource Technology Open access	24 Jun 2020	120
33	Lignin solubilisation and gentle fractionation in liquid ammonia Zea Strassberger, Pepijn Prinsen, Frits van der Klis et al. · Green Chemistry Open access	18 Sep 2014	117
34	Contaminants in biochar and suggested mitigation measures – a review Huawen Han, Wolfram Buss, Yuanzhang Zheng et al. · Chemical Engineering Journal Open access	8 Sep 2021	111
35	Why does mineral fertilization increase soil carbon stocks in temperate grasslands? Christopher Poeplau, D. Zopf, Bärbel Greiner et al. · Agriculture Ecosystems & Environment Open access	21 Jun 2018	111
36	TRANSPATH(R): an integrated database on signal transduction and a tool for array analysis Mathias Krull · Nucleic Acids Research Open access	2003	110
37	The broad impacts of corn stover and wheat straw removal for biofuel production on crop productivity, soil health and greenhouse gas emissions: A review Martín Leonardo Battaglia, Wade E. Thomason, John Herschel Fike et al. · GCB Bioenergy Open access	24 Oct 2020	106
38	A statistical analysis of fibre size and shape distribution after compounding in composites reinforced by natural fibres Nicolas Le Moigne, Martien van den Oever, Tatiana Budtova · Composites Part A Applied Science and Manufacturing Open access	24 Jul 2011	106
39	Comparative life cycle assessment of bio‐based insulation materials: Environmental and economic performances Maximilian Schulte, Iris M. Lewandowski, Ralf Pude et al. · GCB Bioenergy Open access	15 Mar 2021	102
40	A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum François Wasels, Jennifer Jean-Marie, Florent Collas et al. · Journal of Microbiological Methods Open access	10 Jun 2017	102
41	Brownian Dynamics Simulation of Protein Solutions: Structural and Dynamical Properties Paolo Mereghetti, Razif R. Gabdoulline, Rebecca C. Wade · Biophysical Journal Open access	Dec 2010	99
42	Verification of systems biology research in the age of collaborative competition Pablo Meyer et al. · Nature Biotechnology Open access	Sep 2011	98
43	Beyond microarrays: Finding key transcription factors controlling signal transduction pathways Alexdander Kel, Nico Voss, Ruy Jáuregui et al. · BMC Bioinformatics Open access	Sep 2006	97
44	A mussel-inspired adhesive with stronger bonding strength under underwater conditions than under dry conditions Ailei Li, Youbing Mu, Wei Jiang et al. · Chemical Communications Open access	2015	97
45	Implementing miscanthus into farming systems: A review of agronomic practices, capital and labour demand Bastian Winkler, Anja Mangold, Moritz von Cossel et al. · Renewable and Sustainable Energy Reviews Open access	24 Jul 2020	96
46	Evaluation of Miscanthus sinensis biomass quality as feedstock for conversion into different bioenergy products Tim van der Weijde, Andreas Kiesel, Yasir Iqbal et al. · GCB Bioenergy Open access	8 Mar 2016	96
47	Recent advances in the production of polyols from lignocellulosic biomass and biomass-derived compounds Xiaoran Liu, Xicheng Wang, Shengxi Yao et al. · RSC Advances	2014	95
48	Unlocking the Fertilizer Potential of Waste-Derived Biochar Wolfram Buss, Anna A. Bogush, Konstantin Ignatyev et al. · ACS Sustainable Chemistry & Engineering Open access	23 Jul 2020	91
49	The TRANSPATH signal transduction database: a knowledge base on signal transduction networks Frank Schacherer, Claudia Choi, U Götze et al. · Bioinformatics	Nov 2001	88
50	Biodegradation of polyhydroxyalkanoates: current state and future prospects Ani Paloyan, Mane Tadevosyan, Diana Ghevondyan et al. · Frontiers in Microbiology Open access	24 Feb 2025	86

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.