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Institution · Bioclear Earth (Netherlands)

Most cited papers from Bioclear Earth (Netherlands)

Bioclear Earth (Netherlands)

What are the most cited papers from Bioclear Earth (Netherlands)?

The most cited paper from Bioclear Earth (Netherlands) is "Toward almost closed genomes with GapFiller" (Marten Boetzer, Walter Pirovano, 2012), with 1,210 citations. Next come "Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution" (677) and "SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information" (597).

Showing 50 of 58 papers. Every paper with more than 20 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 Toward almost closed genomes with GapFiller Marten Boetzer, Walter Pirovano · Genome biology Open access 25 Jun 2012 1,210
2 Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution Björn F. Koel, David F. Burke, Theo M. Bestebroer et al. · Science Open access 21 Nov 2013 677
3 SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information Marten Boetzer, Walter Pirovano · BMC Bioinformatics Open access 20 Jun 2014 597
4 Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus Ronald P. de Vries et al. · Genome biology Open access117 authors 14 Feb 2017 519
5 The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system Freek J. Vonk et al. · Proceedings of the National Academy of Sciences Open access 2 Dec 2013 500
6 Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana Klaus Mayer et al. · Nature 230 authors Dec 1999 393
7 Is biological treatment a viable alternative for micropollutant removal in drinking water treatment processes? Jessica Benner, Damian E. Helbling, Hans‐Peter E. Kohler et al. · Water Research 9 Aug 2013 350
8 Identity, abundance and ecophysiology of filamentous Chloroflexi species present in activated sludge treatment plants Caroline Kragelund, Caterina Levantesi, Arjan R. Borger et al. · FEMS Microbiology Ecology Open access 22 Dec 2006 262
9 Lipid exchanges drove the evolution of mutualism during plant terrestrialization Mélanie K. Rich et al. · Science 21 May 2021 223
10 Denitrification as an N2O sink Mónica Conthe, Pawel Lycus, Magnus Ø. Arntzen et al. · Water Research Open access 23 Dec 2018 194
11 Assessing the origin of bacteria in tap water and distribution system in an unchlorinated drinking water system by SourceTracker using microbial community fingerprints Gang Liu, Ya Zhang, Ed van der Mark et al. · Water Research Open access 18 Mar 2018 176
12 The use of acute and chronic bioassays to determine the ecological risk and bioremediation efficiency of oil-polluted soils Cornelis A.M. van Gestel, Jaap J. van der Waarde, J. G. M. Derksen et al. · Environmental Toxicology and Chemistry Jul 2001 160
13 Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome Niccolò Carlino et al. · Cell Open access182 authors 29 Aug 2024 139
14 Biofilm formation by Escherichia coli is stimulated by synergistic interactions and co-adhesion mechanisms with adherence-proficient bacteria Marie‐Hélène Castonguay, Saskia van der Schaaf, Wolfgang Koester et al. · Research in Microbiology Open access 22 Nov 2005 139
15 Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples Alfred J. Arulandhu et al. · GigaScience Open access 19 Aug 2017 116
16 First draft genome sequence of the Japanese eel, Anguilla japonica Christiaan V. Henkel, Ron P. Dirks, Daniëlle L. de Wijze et al. · Gene Open access 29 Sep 2012 110
17 Identity, abundance and ecophysiology of filamentous bacteria belonging to the Bacteroidetes present in activated sludge plants Caroline Kragelund, Caterina Levantesi, Arjan R. Borger et al. · Microbiology Open access 29 Feb 2008 107
18 Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects Terry Vrijenhoek et al. · European Journal of Human Genetics Open access 28 Jan 2015 94
19 Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production Weren W. J. M. de Vet, Inez J.T. Dinkla, Gerard Muyzer et al. · Water Research 15 Oct 2008 92
20 Effect of strigolactones on recruitment of the rice root-associated microbiome Bora Kim, Johan A. Westerhuis, Age K. Smilde et al. · FEMS Microbiology Ecology Open access Feb 2022 91
21 Biological iron oxidation by Gallionella spp. in drinking water production under fully aerated conditions Weren W. J. M. de Vet, Inez J.T. Dinkla, Luuk Cornelis Rietveld et al. · Water Research 3 Aug 2011 89
22 Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection Anita Ordas, Zoltán Hegedüs, Christiaan V. Henkel et al. · Fish & Shellfish Immunology 3 Sep 2010 82
23 Filamentous micro-organisms observed in industrial activated sludge plants Dick H. Eikelboom, Bert Geurkink · Water Science & Technology Jul 2002 76
24 Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa Anneke van der Zee, Bart Kraak, Arjan Burggraaf et al. · Frontiers in Microbiology Open access 5 Sep 2018 75
25 Anxiolytic effects of a galacto-oligosaccharides prebiotic in healthy females (18–25 years) with corresponding changes in gut bacterial composition Nicola Johnstone, Chiara Milesi, Olivia K. Burn et al. · Scientific Reports Open access 15 Apr 2021 74
26 Filamentous Alphaproteobacteria Associated with Bulking in Industrial Wastewater Treatment Plants Caterina Levantesi, Claudia Beimfohr, Bert Geurkink et al. · Systematic and Applied Microbiology 2 Nov 2004 74
27 Hydrophobically gated memristive nanopores for neuromorphic applications Gonçalo Paulo, Ke Ning Sun, Giovanni Di Muccio et al. · Nature Communications Open access 18 Dec 2023 72
28 Artificial MicroRNAs Targeting C9orf72 Can Reduce Accumulation of Intra-nuclear Transcripts in ALS and FTD Patients Raygene Martier, Jolanda M.P. Liefhebber, Jana Miniarikova et al. · Molecular Therapy — Nucleic Acids Open access 30 Jan 2019 61
29 Ecophysiology of different filamentous Alphaproteobacteria in industrial wastewater treatment plants Caroline Kragelund, Yunhong Kong, Jaap Van Der Waarde et al. · Microbiology Open access 27 Sep 2006 59
30 Integration of biopolymer production with process water treatment at a sugar factory Simon Anterrieu, Luca Quadri, Bert Geurkink et al. · New Biotechnology 19 Dec 2013 59
31 Uncovering a Predictive Molecular Signature for the Onset of NASH-Related Fibrosis in a Translational NASH Mouse Model Arianne van Koppen et al. · Cellular and Molecular Gastroenterology and Hepatology Open access 14 Oct 2017 58
32 Polycyclic Aromatic Hydrocarbons in Soil – Practical Options for Remediation J. de Boer, Marlea Wagelmans · CLEAN - Soil Air Water 3 Feb 2016 57
33 Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites Farai Maphosa, Shakti H. Lieten, Inez J.T. Dinkla et al. · Frontiers in Microbiology Open access 2012 57
34 Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism Giacomo Potente, Étienne Léveillé‐Bourret, Narjes Yousefi et al. · Molecular Biology and Evolution Open access Feb 2022 56
35 Biocarriers Improve Bioaugmentation Efficiency of a Rapid Sand Filter for the Treatment of 2,6-Dichlorobenzamide-Contaminated Drinking Water Benjamin Horemans, Bart Raes, Johanna Vandermaesen et al. · Environmental Science & Technology 28 Dec 2016 49
36 The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing Dick S. J. Groenenberg, Walter Pirovano, Edmund Gittenberger et al. · BMC Genomics Open access 2012 45
37 Molecular and modeling analyses of the structure and function of nitrifying activated sludge Bruce E. Rittmann, Chrysi Laspidou, Jodi L. Flax et al. · Water Science & Technology Open access 1999 45
38 Multiple Sequence Alignment Punto Bawono, Maurits J. J. Dijkstra, Walter Pirovano et al. · Methods in molecular biology Book chapter 28 Nov 2016 44
39 Phylogenetic analysis and in situ identification of “Nostocoida limicola”-like filamentous bacteria in activated sludge from industrial wastewater treatment plants Jiri Snaidr, Claudia Beimfohr, Caterina Levantesi et al. · Water Science & Technology Jul 2002 44
40 Phylogeny, physiology and distribution of ‘ Candidatus Microthrix calida’, a new Microthrix species isolated from industrial activated sludge wastewater treatment plants Caterina Levantesi, Simona Rossetti, Karin Thelen et al. · Environmental Microbiology 16 May 2006 43
41 Effect of human saliva on the consistency of thickened drinks for individuals with dysphagia Katleen J. R. Vallons, Harold J. Helmens, A.A.C.M. Oudhuis · International Journal of Language & Communication Disorders 8 Oct 2014 39
42 Increasing market opportunities for renewable energy technologies with innovations in aquifer thermal energy storage Nanne K. Hoekstra, Marco Pellegrini, Martin Bloemendal et al. · The Science of The Total Environment Open access 17 Dec 2019 38
43 Molecular monitoring of bulking sludge in industrial wastewater treatment plants Jaap Van Der Waarde, Janneke Krooneman, Bert Geurkink et al. · Water Science & Technology Jul 2002 37
44 Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population Walter Pirovano, Laura Miozzi, Marten Boetzer et al. · Frontiers in Microbiology Open access 27 Jan 2015 36
45 A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha Seydina Issa Diop, Oliver Subotic, Alejandro Giraldo‐Fonseca et al. · The Plant Journal Open access 6 Nov 2019 33
46 Medicines in the Kitchen: Gender Roles Shape Ethnobotanical Knowledge in Marrakshi Households Irene Teixidor‐Toneu, Sara Elgadi, Hamza Zine et al. · Foods Open access 30 Sep 2021 32
47 Risk management and regeneration of brownfields using bioenergy crops Anja Enell, Yvonne Andersson‐Sköld, Jenny L. K. Vestin et al. · Journal of Soils and Sediments 25 Sep 2015 32
48 Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control Torsten Gursinsky, Walter Pirovano, Giorgio Gambino et al. · PLANT PHYSIOLOGY Open access 26 May 2015 29
49 Embedding siRNA sequences targeting Apolipoprotein B100 in shRNA and miRNA scaffolds results in differential processing and in vivo efficacy Piotr Maczuga, Jacek Lubelski, Richard van Logtenstein et al. · Molecular Therapy Open access 23 Oct 2012 28
50 A case of Ignatzschineria bacteraemia in an unconscious man from the Netherlands Edou R. Heddema, F. G. J. Janssen, Harro van Westreenen · JMM Case Reports Open access 16 May 2016 26

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.