Institution · Biocom
Most cited papers from Biocom
What are the most cited papers from Biocom?
The most cited paper from Biocom is "STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets" (Damian Szklarczyk, Annika L. Gable, David B. Lyon et al., 2018), with 19,535 citations. Next come "The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible" (7,527) and "Resolution limit in community detection" (3,089).
Showing 50 of 59 papers. Every paper with more than 316 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets Damian Szklarczyk, Annika L. Gable, David B. Lyon et al. · Nucleic Acids Research | 16 Nov 2018 | 19,535 |
| 2 | The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible Damian Szklarczyk, John H. Morris, Helen Victoria Cook et al. · Nucleic Acids Research | 11 Oct 2016 | 7,527 |
| 3 | Resolution limit in community detection Santo Fortunato, Marc Barthélemy · Proceedings of the National Academy of Sciences | 26 Dec 2006 | 3,089 |
| 4 | Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data Nadezhda T. Doncheva, John H. Morris, Jan Gorodkin et al. · Journal of Proteome Research | 19 Nov 2018 | 2,533 |
| 5 | Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center Alice Rebecca Wattam et al. · Nucleic Acids Research | 9 Nov 2016 | 1,748 |
| 6 | Sync: The Emerging Science of Spontaneous Order Nigel D. Goldenfeld · Physics Today | Jun 2004 | 1,490 |
| 7 | Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adl et al. · Journal of Eukaryotic Microbiology | 26 Sep 2018 | 1,448 |
| 8 | HITS-CLIP yields genome-wide insights into brain alternative RNA processing Donny D. Licatalosi, Aldo Mele, John J. Fak et al. · Nature | Nov 2008 | 1,423 |
| 9 | Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR Robert Olson et al. · Nucleic Acids Research | 9 Nov 2022 | 1,325 |
| 10 | The genome of woodland strawberry (Fragaria vesca) Vladimir Shulaev et al. · Nature Genetics | 26 Dec 2010 | 1,261 |
| 11 | The role of the airline transportation network in the prediction and predictability of global epidemics Vittoria Colizza, Alain Barrat, Marc Barthélemy et al. · Proceedings of the National Academy of Sciences | 3 Feb 2006 | 1,221 |
| 12 | Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation Andrew Maltez Thomas et al. · Nature Medicine | Apr 2019 | 1,105 |
| 13 | Biological Network Exploration with Cytoscape 3 Gang Su, John H. Morris, Barry Demchak et al. · Current Protocols in Bioinformatics | Sep 2014 | 1,101 |
| 14 | ModBase, a database of annotated comparative protein structure models, and associated resources Ursula Pieper, Benjamin Webb, David T. Barkan et al. · Nucleic Acids Research | 19 Nov 2010 | 1,094 |
| 15 | The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities James J. Davis et al. · Nucleic Acids Research | 12 Oct 2019 | 972 |
| 16 | Hierarchical Action and Inhibition of Plant Dicer-Like Proteins in Antiviral Defense Angélique Deleris, Javier Gallego‐Bartolomé, Jinsong Bao et al. · Science | Jun 2006 | 959 |
| 17 | Factors affecting strength of perceived foreign accent in a second language James Emil Flege, Murray J. Munro, IAN R. A. MACKAY · The Journal of the Acoustical Society of America | May 1995 | 897 |
| 18 | Virtual and biomolecular screening converge on a selective agonist for GPR30 Cristian Bologa, Chetana M. Revankar, Susan M. Young et al. · Nature Chemical Biology | 5 Mar 2006 | 820 |
| 19 | Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation Taiowa A. Montgomery, Miya D. Howell, Josh T. Cuperus et al. · Cell | Apr 2008 | 794 |
| 20 | Measurement of the surface free energy of bacterial cell surfaces and its relevance for adhesion Hendrik J. Busscher, A.H. Weerkamp, H.C. van der Mei et al. · Applied and Environmental Microbiology | Nov 1984 | 739 |
| 21 | Specialization and evolution of endogenous small RNA pathways Elisabeth J. Chapman, James C. Carrington · Nature Reviews Genetics | 18 Oct 2007 | 703 |
| 22 | UCSF Chimera, MODELLER, and IMP: An integrated modeling system Zheng Rong Yang, Keren Lasker, Dina Schneidman‐Duhovny et al. · Journal of Structural Biology | 23 Sep 2011 | 683 |
| 23 | Racial, Economic, and Health Inequality and COVID-19 Infection in the United States Vida Abedi, Oluwaseyi Olulana, Venkatesh Avula et al. · Journal of Racial and Ethnic Health Disparities | Sep 2020 | 658 |
| 24 | Artificial Intelligence Transforms the Future of Health Care Nariman Noorbakhsh-Sabet, Ramin Zand, Yanfei Zhang et al. · The American Journal of Medicine | 30 Jan 2019 | 631 |
| 25 | Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post‐germination stages Po‐Pu Liu, Taiowa A. Montgomery, Noah Fahlgren et al. · The Plant Journal | 30 Jul 2007 | 624 |
| 26 | Estrogen Signaling through the Transmembrane G Protein–Coupled Receptor GPR30 Eric R. Prossnitz, Jeffrey B. Arterburn, Harriet Olivia Smith et al. · Annual Review of Physiology | 13 Feb 2008 | 591 |
| 27 | Multi-Scale Modeling of Tissues Using CompuCell3D Maciej Swat, Gilberto L. Thomas, Julio Monti Belmonte et al. · Methods in cell biology | 2012 | 573 |
| 28 | Dynamical patterns of epidemic outbreaks in complex heterogeneous networks Marc Barthélemy, Alain Barrat, Romualdo Pastor‐Satorras et al. · Journal of Theoretical Biology | 11 Mar 2005 | 567 |
| 29 | Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline Weifeng Gu, Masaki Shirayama, Darryl Conte et al. · Molecular Cell | Oct 2009 | 566 |
| 30 | An RNA map predicting Nova-dependent splicing regulation Jernej Ule, Giovanni Stefani, Aldo Mele et al. · Nature | 25 Oct 2006 | 549 |
| 31 | Real-space grids and the Octopus code as tools for the development of new simulation approaches for electronic systems Xavier Andrade, David A. Strubbe, Umberto De Giovannini et al. · Physical Chemistry Chemical Physics | 2015 | 546 |
| 32 | In vivo effects of a GPR30 antagonist Megan K. Dennis, Ritwik Burai, Chinnasamy Ramesh et al. · Nature Chemical Biology | 3 May 2009 | 531 |
| 33 | Methicillin-resistantStaphylococcus aureusin Europe, 1999–2002 Edine W. Tiemersma, Stef L.A.M. Bronzwaer, Outi Lyytikäinen et al. · Emerging infectious diseases | Sep 2004 | 529 |
| 34 | Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors Lóránt Lakatos, Tibor Csorba, Vitantonio Pantaleo et al. · The EMBO Journal | 25 May 2006 | 518 |
| 35 | Pursuing the leadlikeness concept in pharmaceutical research Mike Hann, Tudor Ionel Oprea · Current Opinion in Chemical Biology | 8 May 2004 | 515 |
| 36 | Epidemic modeling in metapopulation systems with heterogeneous coupling pattern: Theory and simulations Vittoria Colizza, Alessandro Vespignani · Journal of Theoretical Biology | 5 Dec 2007 | 508 |
| 37 | Distribution and characterization of estrogen receptor G protein-coupled receptor 30 in the rat central nervous system Eugen Brailoiu, Siok L. Dun, Gabriela Cristina Brailoiu et al. · Journal of Endocrinology | 30 Apr 2007 | 502 |
| 38 | Mutation rate variation in multicellular eukaryotes: causes and consequences Charles F. Baer, Michael M. Miyamoto, Dee R. Denver · Nature Reviews Genetics | 18 Jul 2007 | 502 |
| 39 | Presence of icaA and icaD Genes and Slime Production in a Collection of Staphylococcal Strains from Catheter-Associated Infections Carla Renata Arciola, Lucilla Baldassarri, Lucio Montanaro · Journal of Clinical Microbiology | Jun 2001 | 498 |
| 40 | The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion Jeffrey J. Coleman et al. · PLoS Genetics | 27 Aug 2009 | 486 |
| 41 | Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites Philipp Wiemann et al. · PLoS Pathogens | 27 Jun 2013 | 479 |
| 42 | Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis Josh T. Cuperus, Alberto Carbonell, Noah Fahlgren et al. · Nature Structural & Molecular Biology | 18 Jun 2010 | 472 |
| 43 | Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions Grigore D Pintilie, Junjie Zhang, Thomas D. Goddard et al. · Journal of Structural Biology | 25 Mar 2010 | 431 |
| 44 | Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project Leif Andersson et al. · Genome biology | 24 Mar 2015 | 416 |
| 45 | G Protein–Coupled Receptor 30 (GPR30) Mediates Gene Expression Changes and Growth Response to 17β-Estradiol and Selective GPR30 Ligand G-1 in Ovarian Cancer Cells Lidia Albanito, Antonio Madeo, Rosamaria Lappano et al. · Cancer Research | 15 Feb 2007 | 396 |
| 46 | Organosolv pretreatment of plant biomass for enhanced enzymatic saccharification Zhanying Zhang, Mark D. Harrison, Darryn W. Rackemann et al. · Green Chemistry | 15 Dec 2015 | 393 |
| 47 | Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism José Luís Fachi et al. · Cell Reports | Apr 2019 | 375 |
| 48 | Drug repurposing from an academic perspective Tudor Ionel Oprea et al. · Drug Discovery Today Therapeutic Strategies | 2011 | 374 |
| 49 | Age of learning affects the authenticity of voice-onset time (VOT) in stop consonants produced in a second language James Emil Flege · The Journal of the Acoustical Society of America | 1991 | 374 |
| 50 | Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi Heng-Chi Lee, Liande Li, Weifeng Gu et al. · Molecular Cell | 23 Apr 2010 | 364 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.