Most cited papers from Biospyder (United States)

Biospyder (United States)

What are the most cited papers from Biospyder (United States)?

The most cited paper from Biospyder (United States) is "A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling" (Joanne M. Yeakley, Peter J. Shepard, Diana E. Goyena et al., 2017), with 232 citations. Next come "A chemical–biological similarity-based grouping of complex substances as a prototype approach for evaluating chemical alternatives" (83) and "Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue" (55).

Published TypeFieldAccess

Showing 28 of 28 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling Joanne M. Yeakley, Peter J. Shepard, Diana E. Goyena et al. · PLoS ONE Open access	25 May 2017	232
2	A chemical–biological similarity-based grouping of complex substances as a prototype approach for evaluating chemical alternatives Fabian Alexander Grimm, Yasuhiro Iwata, Oksana Sirenko et al. · Green Chemistry Open access	2016	83
3	Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue Christy L. Trejo, Miloš Babić, Elliot Imler et al. · PLoS ONE Open access	22 Feb 2019	55
4	Comparison of base-line and chemical-induced transcriptomic responses in HepaRG and RPTEC/TERT1 cells using TempO-Seq Alice Limonciel, Gamze Ates, Giada Carta et al. · Archives of Toxicology Open access	14 Jul 2018	48
5	Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics Athanasia D. Panopoulos, Erin N. Smith, Angelo D. Arias et al. · Cell stem cell Open access	Apr 2017	40
6	Towards the development of an omics data analysis framework Marcha C. T. Verheijen, Weida Tong, Leming M. Shi et al. · Regulatory Toxicology and Pharmacology	19 Feb 2020	21
7	Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics Michele R. Balik-Meisner, Deepak Mav, Dhiral P. Phadke et al. · Zebrafish Open access	12 Jun 2019	20
8	Whole-transcriptome sequencing identified gene expression signatures associated with aggressive clear cell renal cell carcinoma Ken Batai, Elliot Imler, Jayce Pangilinan et al. · Genes & Cancer Open access	11 Nov 2018	18
9	Characterization of carfilzomib-resistant non-small cell lung cancer cell lines Neale T. Hanke, Elliot Imler, Marilyn T. Marron et al. · Journal of Cancer Research and Clinical Oncology Open access	15 May 2018	16
10	Isolation and genome sequencing of cytomegaloviruses from Natal multimammate mice (Mastomys natalensis) Frederick Hansen et al. · Journal of General Virology Open access	29 Aug 2023	7
11	Comparison of Gene Expression Responses in the Small Intestine of Mice Following Exposure to 3 Carcinogens Using the S1500+ Gene Set Informs a Potential Common Adverse Outcome Pathway Grace A. Chappell, Julia E. Rager, Jeffrey C. Wolf et al. · Toxicologic Pathology Open access	26 Sep 2019	7
12	Molecular Gene Expression Testing to Identify Alzheimer’s Disease with High Accuracy from Fingerstick Blood Bruce E. Seligmann, Salvatore Camiolo, Mónica Hernández Alava et al. · Journal of Alzheimer s Disease Open access	11 Sep 2024	6
13	classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes Gerard P. Quinn, Tamas Sessler, Baharak Ahmaderaghi et al. · BMC Bioinformatics Open access	31 Mar 2022	6
14	Decoding cellular stress states for toxicology using single-cell transcriptomics Imran Hussain Shah, David A. Gallegos, Brian Robinette et al. · NAM journal. Open access	2025	3
15	High-throughput gene expression analysis with TempO-LINC sensitively resolves complex brain, lung and kidney heterogeneity at single-cell resolution Dennis J. Eastburn, Kevin S. White, Nathan D. Jayne et al. · bioRxiv (Cold Spring Harbor Laboratory) PreprintOpen access	6 Aug 2024	3
16	Targeted whole transcriptome gene expression profiling for mechanistic toxicology Harper C. VanSteenhouse, Peter J. Shepard, Joanne M. Yeakley et al. · Toxicology Letters	Oct 2017	2
17	Comparison of whole transcriptome and targeted RNA sequencing for ecological high-throughput transcriptomics Daniel L. Villeneuve, M W Nash, Adam D. Biales et al. · Regulatory Toxicology and Pharmacology Open access	24 Jun 2025	1
18	P30-75 High-Throughput, Extraction-Free miRNA Profiling for Toxicological Applications M. Opichka, M. Hernandez, A. Kilili et al. · Toxicology Letters	Sep 2026	0
19	P30-52 TempO-LINC single-cell transcriptomics assay sensitively resolves cellular heterogeneity and elucidates mechanisms of toxicity Salvatore Camiolo, Dennis J. Eastburn, Kevin S. White et al. · Toxicology Letters	Sep 2025	0
20	P30-55 Advancing miRNA Profiling in Toxicology with Extraction-Free Whole miRNome Expression Analysis G. McComb, Zean Chen, Megan A. Opichka et al. · Toxicology Letters	Sep 2025	0
21	Multi-omic Liquid Biopsy Fingerstick Blood Test Platform for Neurological Disorders: Classification of Alzheimer’s Disease, Parkinson’s Disease and Myasthenia Gravis (P11-3.002) Bruce E. Seligmann, Mónica Hernández Alava, Megan A. Opichka et al. · Neurology	7 Apr 2025	0
22	Adding a Gene Expression Profile Test to Aid Differential Diagnosis and Treatment in Aggressive Large B-Cell Lymphoma: An Early Exploratory Economic Evaluation Janet Bouttell, Heather Fraser, John R. Goodlad et al. · Applied Health Economics and Health Policy Open access	28 Nov 2023	0
23	P03-28: TempO-Seq gene expression assay for evaluating compound metabolism and safety for subjects with variant enzyme activity Joanne M. Yeakley, Gaëlle Rondeau, Salvatore Camiolo et al. · Toxicology Letters	Sep 2023	0
24	A gene expression signature for Alzheimer’s from finger prick blood spotted on a filter paper card Bruce E. Seligmann, Miloš Babić, Kathleen M. Scully et al. · Alzheimer s & Dementia	Dec 2022	0
25	Whole transcriptome profiling of germinal center B-lymphocytes using a universal, integrated workflow of FACS cell sorting and TempO-Seq® assay Bruce E. Seligmann, Klaus Pechhold, Carol E. Schrader et al. · PubMed Central Open access	Aug 2020	0
26	640 CrispR/Cas9 deletion of TLR4 impacts the UV-induced stress response in human keratinocytes Viktoria Kirschnerova, Maria Khawam, Bruce E. Seligmann et al. · Journal of Investigative Dermatology Open access	16 Jun 2020	0
27	Enabling high throughput transcriptomics (HTTr) for mechanistic toxicology by tuning dynamic range H. Van Steenhouse, Joanne M. Yeakley, Peter J. Shepard et al. · Toxicology Letters	12 Sep 2018	0
28	TempO-Seq surrogate whole transcriptome targeted gene expression profiling of archived rat FFPE Harper C. VanSteenhouse, Miloš Babić, Peter J. Shepard et al. · Toxicology Letters	Sep 2016	0

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.