Institution · Ecogenomics (Japan)
Most cited papers from Ecogenomics (Japan)
What are the most cited papers from Ecogenomics (Japan)?
The most cited paper from Ecogenomics (Japan) is "CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes" (Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al., 2015), with 13,397 citations. Next come "An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea" (5,371) and "Defining the core Arabidopsis thaliana root microbiome" (3,001).
Showing 50 of 60 papers. Every paper with more than 131 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research | 14 May 2015 | 13,397 |
| 2 | An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea Daniel T. McDonald, Morgan N. Price, Julia K. Goodrich et al. · The ISME Journal | Dec 2011 | 5,371 |
| 3 | Defining the core Arabidopsis thaliana root microbiome Derek S. Lundberg, Sarah L. Lebeis, Sur Herrera Paredes et al. · Nature | 31 Jul 2012 | 3,001 |
| 4 | Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life Donovan H. Parks, Christian Rinke, Maria S. Chuvochina et al. · Nature Microbiology | 11 Sep 2017 | 2,159 |
| 5 | A complete domain-to-species taxonomy for Bacteria and Archaea Donovan H. Parks, Maria S. Chuvochina, Pierre-Alain Chaumeil et al. · Nature Biotechnology | 27 Apr 2020 | 1,679 |
| 6 | Complex archaea that bridge the gap between prokaryotes and eukaryotes Anja Spang, Jimmy H. W. Saw, Steffen L. Jørgensen et al. · Nature | May 2015 | 1,388 |
| 7 | Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals Kate L. Ormerod, David Wood, Nancy Lachner et al. · Microbiome | 7 Jul 2016 | 705 |
| 8 | An evolving view of methane metabolism in the Archaea Paul N. Evans, Joel A. Boyd, Andy O Leu et al. · Nature Reviews Microbiology | 21 Jan 2019 | 631 |
| 9 | A standardized archaeal taxonomy for the Genome Taxonomy Database Christian Rinke, Maria S. Chuvochina, Aaron James Mussig et al. · Nature Microbiology | 21 Jun 2021 | 515 |
| 10 | Genome-centric view of carbon processing in thawing permafrost Ben J. Woodcroft, Caitlin M. Singleton, Joel A. Boyd et al. · Nature | 11 Jul 2018 | 512 |
| 11 | Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation Jillian M. Petersen, Anna Kemper, Harald R. Gruber‐Vodicka et al. · Nature Microbiology | 24 Oct 2016 | 490 |
| 12 | A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation Stéphane Joost, Aurélie Bonin, Michael W. Bruford et al. · Molecular Ecology | 2 Aug 2007 | 480 |
| 13 | Lysine-Specific Demethylase 1 Is Strongly Expressed in Poorly Differentiated Neuroblastoma: Implications for Therapy Johannes Hubertus Schulte, Soyoung Lim, Alexander R. Schramm et al. · Cancer Research | 17 Feb 2009 | 445 |
| 14 | Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.) David W. Waite, Inka Vanwonterghem, Christian Rinke et al. · Frontiers in Microbiology | 24 Apr 2017 | 436 |
| 15 | Identification of a low–molecular weight TrkB antagonist with anxiolytic and antidepressant activity in mice Maxime Cazorla, Joël Prémont, André Mann et al. · Journal of Clinical Investigation | 18 Apr 2011 | 407 |
| 16 | Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes Ricardo Eloy Alves, Bùi Quang Minh, Tim Urich et al. · Nature Communications | 11 Apr 2018 | 367 |
| 17 | Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence Yun Kit Yeoh, Paul G. Dennis, Chanyarat Paungfoo‐Lonhienne et al. · Nature Communications | 2 Aug 2017 | 345 |
| 18 | Identification of FGFR4-activating mutations in human rhabdomyosarcomas that promote metastasis in xenotransplanted models James G. Taylor et al. · Journal of Clinical Investigation | 5 Oct 2009 | 322 |
| 19 | Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data Lauren M. Bragg, Glenn Stone, Margaret K. Butler et al. · PLoS Computational Biology | 11 Apr 2013 | 301 |
| 20 | A genomic view of the reef-building coral Porites lutea and its microbial symbionts Steven J. Robbins et al. · Nature Microbiology | 23 Sep 2019 | 291 |
| 21 | Meta-analysis of Neuroblastomas Reveals a Skewed ALK Mutation Spectrum in Tumors with MYCN Amplification Sara De Brouwer et al. · Clinical Cancer Research | 18 Aug 2010 | 284 |
| 22 | Gestational diabetes mellitus epigenetically affects genes predominantly involved in metabolic diseases Stéphanie-May Ruchat, Andrée-Anne Houde, Grégory Voisin et al. · Epigenetics | 16 Aug 2013 | 268 |
| 23 | Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil Birgit Wild, Jörg Schnecker, Ricardo Eloy Alves et al. · Soil Biology and Biochemistry | 22 Apr 2014 | 267 |
| 24 | Aquatic toxicity and ecological risk assessment of seven parabens: Individual and additive approach Hiroshi Yamamoto, Ikumi Tamura, Yoshiko Hirata et al. · The Science of The Total Environment | 3 Nov 2011 | 263 |
| 25 | Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies Phillip Byron Pope, Wendy J. M. Smith, Stuart Edward Denman et al. · Science | 30 Jun 2011 | 244 |
| 26 | Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium–host interactions Francesca Turroni et al. · Proceedings of the National Academy of Sciences | 17 Jun 2013 | 242 |
| 27 | Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines Charlotte D. Vavourakis, Rohit Ghai, Francisco Rodríguez‐Valera et al. · Frontiers in Microbiology | 25 Feb 2016 | 221 |
| 28 | Predicting the HMA-LMA Status in Marine Sponges by Machine Learning Lucas Moitinho‐Silva, Georg Steinert, Shaun J. Nielsen et al. · Frontiers in Microbiology | 8 May 2017 | 220 |
| 29 | Viral tagging reveals discrete populations in Synechococcus viral genome sequence space Li Deng, J. Cesar Ignacio‐Espinoza, Ann Gregory et al. · Nature | 11 Jul 2014 | 215 |
| 30 | The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application Yun Kit Yeoh, Chanyarat Paungfoo‐Lonhienne, Paul G. Dennis et al. · Environmental Microbiology | Jun 2015 | 214 |
| 31 | Discovery of a novel methanogen prevalent in thawing permafrost Rhiannon Mondav, Ben J. Woodcroft, Eun‐Hae Kim et al. · Nature Communications | 14 Feb 2014 | 214 |
| 32 | The ACF1 Complex Is Required for DNA Double-Strand Break Repair in Human Cells Li Lan, Ayako Ui, Satoshi Nakajima et al. · Molecular Cell | Dec 2010 | 209 |
| 33 | Expression of pentraxin 3 (PTX3) in human atherosclerotic lesions A F Savchenko, Masaru Imamura, Riuko Ohashi et al. · The Journal of Pathology | 28 Jan 2008 | 198 |
| 34 | Pentraxin 3, a new marker for vascular inflammation, predicts adverse clinical outcomes in patients with heart failure Satoshi Suzuki, Yasuchika Takeishi, Takeshi Niizeki et al. · American Heart Journal | 28 Sep 2007 | 195 |
| 35 | The urgent need for microbiology literacy in society Kenneth Nigel Timmis et al. · Environmental Microbiology | 26 Mar 2019 | 186 |
| 36 | Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation Barbara Bayer, Jana Vojvoda, Pierre Offre et al. · The ISME Journal | 3 Nov 2015 | 186 |
| 37 | Marine biofilms constitute a bank of hidden microbial diversity and functional potential Weipeng Zhang, Wei Zhong Ding, Yong‐Xin Li et al. · Nature Communications | 31 Jan 2019 | 184 |
| 38 | Future reef decalcification under a business-as-usual CO 2 emission scenario Sophie Dove, David I. Kline, Olga Pantos et al. · Proceedings of the National Academy of Sciences | 3 Sep 2013 | 179 |
| 39 | Cyclin D1 and CDK4 Activity Contribute to the Undifferentiated Phenotype in Neuroblastoma Jan J. Molenaar, Marli E. Ebus, Jan Köster et al. · Cancer Research | 15 Apr 2008 | 173 |
| 40 | Integrating Omic Technologies into Aquatic Ecological Risk Assessment and Environmental Monitoring: Hurdles, Achievements, and Future Outlook Graham van Aggelen et al. · Environmental Health Perspectives | 17 Aug 2009 | 170 |
| 41 | Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea Zheng‐Shuang Hua, Yulin Wang, Paul N. Evans et al. · Nature Communications | 8 Oct 2019 | 168 |
| 42 | Cereal Crop Proteomics: Systemic Analysis of Crop Drought Stress Responses Towards Marker-Assisted Selection Breeding Arindam Ghatak, Palak Chaturvedi, Wolfram Weckwerth · Frontiers in Plant Science | 2 Jun 2017 | 165 |
| 43 | Preclinical Development of MGC018, a Duocarmycin-based Antibody–drug Conjugate Targeting B7-H3 for Solid Cancer Juniper A. Scribner et al. · Molecular Cancer Therapeutics | 23 Sep 2020 | 163 |
| 44 | Genome‐centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion Inka Vanwonterghem, Paul D. Jensen, Korneel Rabaey et al. · Environmental Microbiology | 18 Jun 2016 | 163 |
| 45 | IGF2 DNA methylation is a modulator of newborn’s fetal growth and development Julie St‐Pierre, Marie‐France Hivert, Patrice Perron et al. · Epigenetics | 6 Sep 2012 | 163 |
| 46 | Evidence for a rhizobia-induced drought stress response strategy in Medicago truncatula Christiana Staudinger, Vlora Mehmeti-Tershani, Erena Gil‐Quintana et al. · Journal of Proteomics | 23 Jan 2016 | 162 |
| 47 | Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement Abirami Ramalingam, Himabindu Kudapa, Lekha T. Pazhamala et al. · Frontiers in Plant Science | 24 Dec 2015 | 161 |
| 48 | Where have all the viruses gone? Disappearance of seasonal respiratory viruses during the COVID‐19 pandemic Julian Wei-Tze Tang, Seweryn Bialasiewicz, Dominic Edmund Dwyer et al. · Journal of Medical Virology | 24 Mar 2021 | 160 |
| 49 | Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome Dana L. Willner, Philip Hugenholtz, Stephanie Terase Yerkovich et al. · American Journal of Respiratory and Critical Care Medicine | 18 Jan 2013 | 159 |
| 50 | Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples Dana L. Willner, Joshua N. Daly, David M. Whiley et al. · PLoS ONE | 13 Apr 2012 | 156 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.