| 1 |
NextPolish: a fast and efficient genome polishing tool for long-read assembly
Jiang Yong Hu, Junpeng Fan, Zongyi Sun et al. · Bioinformatics
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26 Nov 2019 |
1,349 |
| 2 |
N6-Methyladenine DNA Modification in the Human Genome
Chuan‐Le Xiao, Song Zhu, Minghui He et al. · Molecular Cell
Open access |
Jul 2018 |
555 |
| 3 |
NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads
Jiang Yong Hu, Zhuo Wang, Zongyi Sun et al. · Genome biology
Open access |
26 Apr 2024 |
422 |
| 4 |
A super pan-genomic landscape of rice
Lianguang Shang et al. · Cell Research
Open access |
12 Jul 2022 |
397 |
| 5 |
Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
Qian Liu, Fang Li, Guoliang Yu et al. · Nature Communications
Open access |
4 Jun 2019 |
365 |
| 6 |
A complete telomere-to-telomere assembly of the maize genome
Jian Chen, Zijian Wang, Kaiwen Tan et al. · Nature Genetics
Open access |
15 Jun 2023 |
342 |
| 7 |
Expansion of Human-Specific GGC Repeat in Neuronal Intranuclear Inclusion Disease-Related Disorders
Yun Tian et al. · The American Journal of Human Genetics
Open access |
6 Jun 2019 |
335 |
| 8 |
DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
Peng Ni, Neng Huang, Zhi Zhang et al. · Bioinformatics
Open access |
11 Apr 2019 |
279 |
| 9 |
Genetic structure and insecticide resistance characteristics of fall armyworm populations invading China
Lei Zhang et al. · Molecular Ecology Resources
Open access |
3 Jul 2020 |
260 |
| 10 |
African lungfish genome sheds light on the vertebrate water-to-land transition
Kun Wang et al. · Cell
Open access |
5 Feb 2021 |
204 |
| 11 |
Expansion of GGC repeat in the human-specific NOTCH2NLC gene is associated with essential tremor
Qiying Sun et al. · Brain
|
19 Nov 2019 |
191 |
| 12 |
Reference genome assemblies reveal the origin and evolution of allohexaploid oat
Yuanying Peng et al. · Nature Genetics
Open access |
18 Jul 2022 |
187 |
| 13 |
Phylogenomic analyses provide insights into primate evolution
Yong Shao et al. · Science
Open access |
Jun 2023 |
180 |
| 14 |
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
Dandan Lang, Shilai Zhang, Pingping Ren et al. · GigaScience
Open access |
Dec 2020 |
179 |
| 15 |
Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy
Jianwen Deng et al. · The American Journal of Human Genetics
Open access |
14 May 2020 |
161 |
| 16 |
A near-complete assembly of an Arabidopsis thaliana genome
Xueren Hou, Depeng Wang, Zhukuan Cheng et al. · Molecular Plant
Open access |
Jun 2022 |
157 |
| 17 |
Long-read sequencing identified repeat expansions in the 5′UTR of the NOTCH2NLC gene from Chinese patients with neuronal intranuclear inclusion disease
Jianwen Deng, Muliang Gu, Yu Miao et al. · Journal of Medical Genetics
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14 Aug 2019 |
147 |
| 18 |
The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3
Jiaxi Yu et al. · Brain
Open access |
6 Mar 2021 |
144 |
| 19 |
Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum
Qing Zhang et al. · Nature Genetics
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Jun 2022 |
137 |
| 20 |
Short- and long-read metagenomics expand individualized structural variations in gut microbiomes
Liang Chen, Na Zhao, Jiabao Cao et al. · Nature Communications
Open access |
8 Jun 2022 |
122 |
| 21 |
Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects
Xukai Li et al. · Molecular Plant
Open access |
8 Jul 2022 |
117 |
| 22 |
A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics
Fei Chen, Liyao Su, Shuaiya Hu et al. · Horticulture Research
Open access |
18 Jun 2021 |
116 |
| 23 |
An efficient error correction and accurate assembly tool for noisy long reads
Jiang Yong Hu, Zhuo Wang, Zongyi Sun et al. · bioRxiv (Cold Spring Harbor Laboratory)
PreprintOpen access |
12 Mar 2023 |
114 |
| 24 |
Immune Cell Profiling of COVID-19 Patients in the Recovery Stage by Single-Cell Sequencing
Wen Wen, Wenru Su, Hao Tang et al. · medRxiv
PreprintOpen access |
27 Mar 2020 |
113 |
| 25 |
Long-read sequencing identified intronic repeat expansions in SAMD12 from Chinese pedigrees affected with familial cortical myoclonic tremor with epilepsy
Sheng Yue Zeng et al. · Journal of Medical Genetics
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7 Sep 2018 |
105 |
| 26 |
Single-cell RNA-seq analysis of mouse preimplantation embryos by third-generation sequencing
Xiaoying Fan, Dong Jing Tang, Yuhan Liao et al. · PLoS Biology
Open access |
30 Dec 2020 |
103 |
| 27 |
NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads
Jiang Yong Hu, Zhuo Wang, Fan Liang et al. · Genomics Proteomics & Bioinformatics
Open access |
4 Jan 2024 |
95 |
| 28 |
The CGG repeat expansion in RILPL1 is associated with oculopharyngodistal myopathy type 4
Jiaxi Yu et al. · The American Journal of Human Genetics
Open access |
10 Feb 2022 |
85 |
| 29 |
Long-read sequencing identified a causal structural variant in an exome-negative case and enabled preimplantation genetic diagnosis
Hefan Miao, Jiapeng Zhou, Qi Yang et al. · Hereditas
Open access |
28 Sep 2018 |
82 |
| 30 |
Single-molecule optical mapping enables quantitative measurement of D4Z4 repeats in facioscapulohumeral muscular dystrophy (FSHD)
Yi Dai, Pidong Li, Zhiqiang Wang et al. · Journal of Medical Genetics
Open access |
10 Sep 2019 |
81 |
| 31 |
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
Fang Li, Jiang Yong Hu, Depeng Wang et al. · BMC Bioinformatics
Open access |
23 May 2018 |
78 |
| 32 |
Location of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore Platform
Liang Hu, Fan Liang, Dehua Cheng et al. · Frontiers in Genetics
Open access |
14 Jan 2020 |
69 |
| 33 |
Genetic origin of sporadic cases and RNA toxicity in neuronal intranuclear inclusion disease
Jianwen Deng, Binbin Zhou, Jiaxi Yu et al. · Journal of Medical Genetics
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25 Mar 2021 |
64 |
| 34 |
Concurrent Detection of Protein and miRNA at the Single Extracellular Vesicle Level Using a Digital Dual CRISPR-Cas Assay
Xun Xu, Yuanyue Zhang, Jiajia Liu et al. · ACS Nano
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17 Dec 2024 |
63 |
| 35 |
The genome of Dioscorea zingiberensis sheds light on the biosynthesis, origin and evolution of the medicinally important diosgenin saponins
Yi Li et al. · Horticulture Research
Open access |
2022 |
63 |
| 36 |
CAG Repeat Expansion in THAP11 Is Associated with a Novel Spinocerebellar Ataxia
Dandan Tan et al. · Movement Disorders
Open access |
6 May 2023 |
52 |
| 37 |
Long-read sequencing and haplotype linkage analysis enabled preimplantation genetic testing for patients carrying pathogenic inversions
Shuo Zhang, Fan Liang, Caixia Lei et al. · Journal of Medical Genetics
Open access |
22 Aug 2019 |
52 |
| 38 |
Long‐read whole‐genome sequencing for the genetic diagnosis of dystrophinopathies
Zhiying Xie, Chengyue Sun, Siwen Zhang et al. · Annals of Clinical and Translational Neurology
Open access |
20 Sep 2020 |
47 |
| 39 |
Long-Read Sequencing Revealed Extragenic and Intragenic Duplications of Exons 56–61 in DMD in an Asymptomatic Male and a DMD Patient
Ying Bai, Ju Liu, Jinghan Xu et al. · Frontiers in Genetics
Open access |
9 May 2022 |
40 |
| 40 |
Chromosome‐level genome assembly and functional characterization of terpene synthases provide insights into the volatile terpenoid biosynthesis of Wurfbainia villosa
Peng Hui Yang, Haiying Zhao, Jieshu Wei et al. · The Plant Journal
Open access |
8 Sep 2022 |
37 |
| 41 |
Genomic insights into the evolution of flavonoid biosynthesis and O-methyltransferase and glucosyltransferase in Chrysanthemum indicum
Yinai Deng, Peng Hui Yang, Qianle Zhang et al. · Cell Reports
Open access |
31 Jan 2024 |
35 |
| 42 |
Long-read sequencing identifies novel structural variations in colorectal cancer
Luming Xu, Xingyue Wang, Xiaohuan Lu et al. · PLoS Genetics
Open access |
22 Feb 2023 |
34 |
| 43 |
Nanopore sequencing of African swine fever virus
Lijia Jia, Mengwei Jiang, Ke Wu et al. · Science China Life Sciences
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5 Nov 2019 |
33 |
| 44 |
Detection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing
Taobo Hu et al. · Frontiers in Cell and Developmental Biology
Open access |
13 Apr 2022 |
32 |
| 45 |
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley
Wenying Zhang et al. · Plant Biotechnology Journal
Open access |
29 Aug 2022 |
30 |
| 46 |
Long‐read assembly of the Chinese indigenous Ningxiang pig genome and identification of genetic variations in fat metabolism among different breeds
Haiming Ma et al. · Molecular Ecology Resources
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10 Nov 2021 |
30 |
| 47 |
GGC repeat expansions in NOTCH2NLC causing a phenotype of distal motor neuropathy and myopathy
Jiaxi Yu et al. · Annals of Clinical and Translational Neurology
Open access |
4 May 2021 |
30 |
| 48 |
A telomere-to-telomere genome assembly of Hongyingzi, a sorghum cultivar used for Chinese Baijiu production
Yanqing Ding, Yilin Wang, Jianxia Xu et al. · The Crop Journal
Open access |
29 Mar 2024 |
28 |
| 49 |
Rapid Acquisition of High-Quality SARS-CoV-2 Genome via Amplicon-Oxford Nanopore Sequencing
Yi Yan, Ke Wu, Jun Chen et al. · Virologica Sinica
Open access |
13 Apr 2021 |
27 |
| 50 |
Rapid prenatal diagnosis of Facioscapulohumeral Muscular Dystrophy 1 by combined Bionano optical mapping and karyomapping
Yuting Zheng, Lingrong Kong, Hui Xu et al. · Prenatal Diagnosis
Open access |
11 Nov 2019 |
24 |