Institution · Institut Français de Bioinformatique
Most cited papers from Institut Français de Bioinformatique
What are the most cited papers from Institut Français de Bioinformatique?
The most cited paper from Institut Français de Bioinformatique is "The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update" (The Galaxy Community et al., 2024), with 963 citations. Next come "Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes" (708) and "In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication" (435).
Showing 50 of 59 papers. Every paper with more than 19 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update The Galaxy Community et al. · Nucleic Acids Research | 3 May 2024 | 963 |
| 2 | Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes Alexandra Moura et al. · Nature Microbiology | 10 Oct 2016 | 708 |
| 3 | In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication Franck Touret, Magali Gilles, Karine Barral et al. · Scientific Reports | 4 Aug 2020 | 435 |
| 4 | MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis David Vallenet, Alexandra Calteau, Mathieu Dubois et al. · Nucleic Acids Research | 8 Oct 2019 | 360 |
| 5 | Towards FAIR principles for research software Anna‐Lena Lamprecht, Leyla Garcia, Mateusz Kuzak et al. · Data Science | 13 Nov 2019 | 339 |
| 6 | RSAT 2015: Regulatory Sequence Analysis Tools Alejandra Medina-Rivera, Matthieu Defrance, Olivier Sand et al. · Nucleic Acids Research | 22 Apr 2015 | 265 |
| 7 | Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain Amandine Perrin et al. · Nature Communications | 24 May 2017 | 193 |
| 8 | Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities Sarah Cohen‐Boulakia, Khalid Belhajjame, Olivier Collin et al. · Future Generation Computer Systems | 16 Jan 2017 | 189 |
| 9 | Tools and data services registry: a community effort to document bioinformatics resources Jon Ison et al. · Nucleic Acids Research | 3 Nov 2015 | 161 |
| 10 | Redefining fundamental concepts of transcription initiation in bacteria Citlalli Mejía-Almonte, Stephen J. W. Busby, Joseph T. Wade et al. · Nature Reviews Genetics | 14 Jul 2020 | 160 |
| 11 | 3D geomechanical modelling for CO2 geologic storage in the Dogger carbonates of the Paris Basin Sandrine Vidal-Gilbert, Jean‐François Nauroy, Etienne Brosse · International journal of greenhouse gas control | 25 Dec 2008 | 142 |
| 12 | Ten steps to get started in Genome Assembly and Annotation Victoria Domínguez Del Angel, Erik Hjerde, Lieven Sterck et al. · F1000Research | 5 Feb 2018 | 136 |
| 13 | RSAT 2022: regulatory sequence analysis tools Walter Santana-Garcia, Jaime Abraham Castro-Mondragon, Mónica Padilla-Gálvez et al. · Nucleic Acids Research | 20 Apr 2022 | 133 |
| 14 | Cellular senescence in malignant cells promotes tumor progression in mouse and patient Glioblastoma Rana Salam, Alexa Saliou, Franck Bielle et al. · Nature Communications | 27 Jan 2023 | 132 |
| 15 | Population genomics and antimicrobial resistance in Corynebacterium diphtheriae Mélanie Hennart, Leonardo G. Panunzi, Carla Rodrigues et al. · Genome Medicine | 27 Nov 2020 | 115 |
| 16 | Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems France Denoeud et al. · Cell | Nov 2024 | 96 |
| 17 | Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors Nga Thi Thuy Nguyen, Pierre Vincens, Jean François Dufayard et al. · Nucleic Acids Research | 20 Oct 2021 | 90 |
| 18 | The bio.tools registry of software tools and data resources for the life sciences Jon Ison et al. · Genome biology | 12 Aug 2019 | 90 |
| 19 | Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable Carla N. Mavian et al. · Proceedings of the National Academy of Sciences | 7 May 2020 | 83 |
| 20 | Clonal hematopoiesis driven by chromosome 1q/MDM4 trisomy defines a canonical route toward leukemia in Fanconi anemia Marie Sébert et al. · Cell stem cell | Feb 2023 | 79 |
| 21 | Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes Philipp E. Bayer, Jakob Petereit, Éloi Durant et al. · The Plant Genome | 29 May 2022 | 78 |
| 22 | PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes Alexis Dereeper, Marilyne Summo, Damien F. Meyer · Bioinformatics | 2 Aug 2022 | 74 |
| 23 | Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review Erwan Sallard, José Halloy, Didier Casañe et al. · Environmental Chemistry Letters | 4 Feb 2021 | 72 |
| 24 | Transient Receptor Potential Channel Expression Signatures in Tumor-Derived Endothelial Cells: Functional Roles in Prostate Cancer Angiogenesis Michela Bernardini, Alessia Brossa, Giorgia Chinigò et al. · Cancers | 8 Jul 2019 | 63 |
| 25 | Cytoplasmic forces functionally reorganize nuclear condensates in oocytes Adel Al Jord, Gaëlle Letort, Soline Chanet et al. · Nature Communications | 29 Aug 2022 | 61 |
| 26 | Recommendations for the packaging and containerizing of bioinformatics software Björn Grüening, Olivier Sallou, Pablo A Moreno et al. · F1000Research | 20 Mar 2019 | 58 |
| 27 | Ten simple rules for making training materials FAIR Leyla Garcia et al. · PLoS Computational Biology | 21 May 2020 | 57 |
| 28 | Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance Gabriel Thérizols et al. · Nature Communications | 10 Jan 2022 | 56 |
| 29 | MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling Nessim Raouraoua, Claudio Mirabello, Thibaut Véry et al. · Nature Computational Science | 11 Nov 2024 | 53 |
| 30 | The banana genome hub: a community database for genomics in the Musaceae Gaëtan Droc, Guillaume Martin, Valentin Guignon et al. · Horticulture Research | 2022 | 53 |
| 31 | Modeling Fresh Air Charge and Residual Gas Fraction on a Dual Independent Variable Valve Timing SI Engine Thomas Leroy, G. Alix, J. Chauvin et al. · SAE International Journal of Engines | 14 Apr 2008 | 53 |
| 32 | FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards Alban Gaignard, Thomas Rosnet, Frédéric de Lamotte et al. · Journal of Biomedical Semantics | Jul 2023 | 50 |
| 33 | DaReUS-Loop: a web server to model multiple loops in homology models Yasaman Karami, Julien Rey, Guillaume Postic et al. · Nucleic Acids Research | 7 May 2019 | 45 |
| 34 | Computational Design Studies for a High-Efficiency and Low-Emissions Free Piston Engine Prototype Andreas Kleemann, Jean-Charles Dabadie, S. Henriot · SAE technical papers on CD-ROM/SAE technical paper series | 25 Oct 2004 | 44 |
| 35 | Core-scale description of porous media dissolution during acid injection - Part I: theoretical development Fabrice Golfier, B. Bazin, R. Lenormand et al. · Computational and Applied Mathematics | Dec 2004 | 41 |
| 36 | GreenPhylDB v5: a comparative pangenomic database for plant genomes Valentin Guignon, Abdel Toure, Gaëtan Droc et al. · Nucleic Acids Research | 22 Oct 2020 | 40 |
| 37 | BioShaDock: a community driven bioinformatics shared Docker-based tools registry François Moreews, Olivier Sallou, Hervé Ménager et al. · F1000Research | 14 Dec 2015 | 39 |
| 38 | Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example Najla Ksouri, Jaime Abraham Castro-Mondragon, Francesc Montardit-Tardà et al. · PLANT PHYSIOLOGY | 31 Dec 2020 | 38 |
| 39 | Combustion Control of Diesel Engines Using Injection Timing Mathieu Hillion, H. Buhlbuck, J. Chauvin et al. · SAE technical papers on CD-ROM/SAE technical paper series | 20 Apr 2009 | 38 |
| 40 | Circulating proteomic signature of early death in heart failure patients with reduced ejection fraction Marie Cuvelliez, Vincent Vandewalle, Maxime Brunin et al. · Scientific Reports | 16 Dec 2019 | 37 |
| 41 | A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae Ziwei Wang, Mathieu Rouard, Manosh Kumar Biswas et al. · GigaScience | 2022 | 36 |
| 42 | PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets Aurore Comte, Théo Tricou, Éric Tannier et al. · Molecular Biology and Evolution | 23 Oct 2023 | 35 |
| 43 | Panache: a web browser-based viewer for linearized pangenomes Éloi Durant, François Sabot, Matthieu Conte et al. · Bioinformatics | 30 Sep 2021 | 35 |
| 44 | 1D Simulation of Turbocharged Gasoline Direct Injection Engine for Transient Strategy Optimization Andreas Albrecht, Gilles Corde, Vincent Knop et al. · SAE technical papers on CD-ROM/SAE technical paper series | 11 Apr 2005 | 27 |
| 45 | Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads Morgane Touzot, Tristan Lefébure, Thierry Lengagne et al. · The Science of The Total Environment | 19 Nov 2021 | 25 |
| 46 | Active Combustion Control of Diesel HCCI Engine: Combustion Timing Mathieu Hillion, J. Chauvin, Olivier S. Grondin et al. · SAE technical papers on CD-ROM/SAE technical paper series | 14 Apr 2008 | 25 |
| 47 | sraX: A Novel Comprehensive Resistome Analysis Tool Leonardo G. Panunzi · Frontiers in Microbiology | 4 Feb 2020 | 24 |
| 48 | Etude geometrique et experimentale d'un bassin transporte; exemple du synclinorium de l'Alto Beni (Andes centrales) Patrice Baby, B. Colletta, David Zubieta | Nov 1995 | 24 |
| 49 | Bioimage analysis workflows: community resources to navigate through a complex ecosystem Perrine Paul‐Gilloteaux, Sébastien Tosi, Jean-Karim Hèriché et al. · F1000Research | 26 Apr 2021 | 23 |
| 50 | Modeling Engine Turbulent Auto-Ignition Using Tabulated Detailed Chemistry Ganesh Subramanian, A. Pires da Cruz, Olivier Colin et al. · SAE technical papers on CD-ROM/SAE technical paper series | 16 Apr 2007 | 23 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.