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Most cited papers from Institute for Disease Modeling

Institute for Disease Modeling

What are the most cited papers from Institute for Disease Modeling?

The most cited paper from Institute for Disease Modeling is "Discovering governing equations from data by sparse identification of nonlinear dynamical systems" (Steven L. Brunton, Joshua L. Proctor, J. Nathan Kutz, 2016), with 4,849 citations. Next come "The effect of malaria control on Plasmodium falciparum in Africa between 2000 and 2015" (3,642) and "Data-driven discovery of partial differential equations" (1,597).

Showing 50 of 60 papers. Every paper with more than 110 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 Discovering governing equations from data by sparse identification of nonlinear dynamical systems Steven L. Brunton, Joshua L. Proctor, J. Nathan Kutz · Proceedings of the National Academy of Sciences Open access 28 Mar 2016 4,849
2 The effect of malaria control on Plasmodium falciparum in Africa between 2000 and 2015 Samir Bhatt et al. · Nature Open access 16 Sep 2015 3,642
3 Data-driven discovery of partial differential equations Samuel Rudy, Steven L. Brunton, Joshua L. Proctor et al. · Science Advances Open access 7 Apr 2017 1,597
4 Dynamic Mode Decomposition with Control Joshua L. Proctor, Steven L. Brunton, J. Nathan Kutz · SIAM Journal on Applied Dynamical Systems Open access 2016 1,142
5 Covasim: An agent-based model of COVID-19 dynamics and interventions Cliff C. Kerr et al. · PLoS Computational Biology Open access 26 Jul 2021 671
6 Koopman Invariant Subspaces and Finite Linear Representations of Nonlinear Dynamical Systems for Control Steven L. Brunton, Bingni W. Brunton, Joshua L. Proctor et al. · PLoS ONE Open access 26 Feb 2016 643
7 Chaos as an intermittently forced linear system Steven L. Brunton, Bingni W. Brunton, Joshua L. Proctor et al. · Nature Communications Open access 22 May 2017 630
8 Global maps of travel time to healthcare facilities Dan J. Weiss et al. · Nature Medicine Open access 28 Sep 2020 544
9 Mapping the global prevalence, incidence, and mortality of Plasmodium falciparum, 2000–17: a spatial and temporal modelling study Daniel J. Weiss et al. · The Lancet Open access 19 Jun 2019 520
10 Malaria eradication within a generation: ambitious, achievable, and necessary Richard GA Feachem et al. · The Lancet Open access Sep 2019 417
11 Determining the optimal strategy for reopening schools, the impact of test and trace interventions, and the risk of occurrence of a second COVID-19 epidemic wave in the UK: a modelling study Jasmina Panovska‐Griffiths, Cliff C. Kerr, Robyn Margaret Stuart et al. · The Lancet Child & Adolescent Health Open access 3 Aug 2020 400
12 CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors Aarathi Sugathan, Marta Biagioli, Christelle Golzio et al. · Proceedings of the National Academy of Sciences Open access 7 Oct 2014 362
13 The Role of Fear-Related Behaviors in the 2013–2016 West Africa Ebola Virus Disease Outbreak James M. Shultz, Janice L. Cooper, Florence K. Baingana et al. · Current Psychiatry Reports Open access 13 Oct 2016 338
14 Sparse Identification of Nonlinear Dynamics with Control (SINDYc)**SLB acknowledges support from the U.S. Air Force Center of Excellence on Nature Inspired Flight Technologies and Ideas (FA9550-14-1-0398). JLP thanks Bill and Melinda Gates for their active support of the Institute of Disease Modeling and their sponsorship through the Global Good Fund. JNK acknowledges support from the U.S. Air For Steven L. Brunton, Joshua L. Proctor, J. Nathan Kutz · IFAC-PapersOnLine Open access 2016 330
15 Cryptic transmission of SARS-CoV-2 in Washington state Trevor Bedford et al. · Science Open access 10 Sep 2020 328
16 Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California Xianding Deng et al. · Science Open access 8 Jun 2020 309
17 Plasmodium vivax in the Era of the Shrinking P. falciparum Map Ric N. Price, Robert James Commons, Katherine E. Battle et al. · Trends in Parasitology ReviewOpen access 22 Apr 2020 297
18 Superspreading events in the transmission dynamics of SARS-CoV-2: Opportunities for interventions and control Benjamin M. Althouse, Edward A. Wenger, Joel C. Miller et al. · PLoS Biology Open access 12 Nov 2020 292
19 Oral, ultra–long-lasting drug delivery: Application toward malaria elimination goals Andrew M. Bellinger et al. · Science Translational Medicine Open access 16 Nov 2016 269
20 Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination Oliver J. Brady, H. Charles J. Godfray, Andrew J. Tatem et al. · Transactions of the Royal Society of Tropical Medicine and Hygiene Open access 28 Jan 2016 263
21 Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration Yi Yu et al. · Human Molecular Genetics Open access 10 Jun 2011 258
22 Indirect effects of the COVID-19 pandemic on malaria intervention coverage, morbidity, and mortality in Africa: a geospatial modelling analysis Daniel J. Weiss et al. · The Lancet Infectious Diseases Open access 21 Sep 2020 255
23 Public health impact and cost-effectiveness of the RTS,S/AS01 malaria vaccine: a systematic comparison of predictions from four mathematical models Melissa A. Penny, Robert Verity, Caitlin A. Bever et al. · The Lancet Open access 5 Nov 2015 253
24 Discovering dynamic patterns from infectious disease data using dynamic mode decomposition Joshua L. Proctor, Philip A. Eckhoff · International Health Open access 26 Feb 2015 245
25 Pathway to Deployment of Gene Drive Mosquitoes as a Potential Biocontrol Tool for Elimination of Malaria in Sub-Saharan Africa: Recommendations of a Scientific Working Group † Stephanie L. James, Frank H. Collins, Philip A. Welkhoff et al. · American Journal of Tropical Medicine and Hygiene Open access 7 Jun 2018 239
26 A review and agenda for integrated disease models including social and behavioural factors Jamie Bedson, Laura Skrip, Danielle Pedi et al. · Nature Human Behaviour Open access 28 Jun 2021 231
27 Development of an oral once-weekly drug delivery system for HIV antiretroviral therapy Ameya R. Kirtane et al. · Nature Communications Open access 27 Dec 2017 231
28 Impact of mosquito gene drive on malaria elimination in a computational model with explicit spatial and temporal dynamics Philip A. Eckhoff, Edward A. Wenger, H. Charles J. Godfray et al. · Proceedings of the National Academy of Sciences Open access 27 Dec 2016 226
29 Modeling malaria genomics reveals transmission decline and rebound in Senegal Rachel F. Daniels, Stephen F. Schaffner, Edward A. Wenger et al. · Proceedings of the National Academy of Sciences Open access 4 May 2015 225
30 Feasibility of achieving the 2025 WHO global tuberculosis targets in South Africa, China, and India: a combined analysis of 11 mathematical models Rein M G J Houben et al. · The Lancet Global Health Open access 10 Oct 2016 212
31 Model selection for dynamical systems via sparse regression and information criteria N. M. Mangan, J. N. Kutz, S. L. Brunton et al. · Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences Open access Aug 2017 205
32 hmmIBD: software to infer pairwise identity by descent between haploid genotypes Stephen F. Schaffner, Aimee R. Taylor, Wesley Wong et al. · Malaria Journal Open access 15 May 2018 204
33 Dynamics of the Human Infectious Reservoir for Malaria Determined by Mosquito Feeding Assays and Ultrasensitive Malaria Diagnosis in Burkina Faso André Lin Ouédraogo, André Lin Ouédraogo, Bronner P. Gonçalves et al. · The Journal of Infectious Diseases 3 Jul 2015 204
34 Maps and metrics of insecticide-treated net access, use, and nets-per-capita in Africa from 2000-2020 Amelia Bertozzi-Villa et al. · Nature Communications Open access 11 Jun 2021 197
35 Water quality prediction using SWAT-ANN coupled approach Navideh Noori, Latif Kalin, Sabahattin Işık · Journal of Hydrology Open access 26 Jun 2020 195
36 Contributions from the silent majority dominate dengue virus transmission Quirine A. ten Bosch, Hannah Clapham, Louis Lambrechts et al. · PLoS Pathogens Open access 3 May 2018 189
37 Incidence and admission rates for severe malaria and their impact on mortality in Africa Flavia Camponovo, Caitlin A. Bever, Katya Galactionova et al. · Malaria Journal Open access 3 Jan 2017 184
38 NADPH Oxidase 2 Interaction with TLR2 Is Required for Efficient Innate Immune Responses to Mycobacteria via Cathelicidin Expression Chul‐Su Yang, Dong-Min Shin, Ki-Hye Kim et al. · The Journal of Immunology Mar 2009 176
39 Sustainable HIV treatment in Africa through viral-load-informed differentiated care Andrew N. Phillips et al. · Nature Open access Dec 2015 169
40 Point-Of-Care Urine LAM Tests for Tuberculosis Diagnosis: A Status Update Michelle Ann Bulterys, Bradley G. Wagner, Maël Redard-Jacot et al. · Journal of Clinical Medicine Open access 31 Dec 2019 162
41 Internet Searches for Suicide Following the Release of 13 Reasons Why John W. Ayers, Benjamin M. Althouse, Eric Craig Leas et al. · JAMA Internal Medicine Open access 31 Jul 2017 160
42 Declines in HIV incidence among men and women in a South African population-based cohort Alain M. Vandormael, Adam N. Akullian, Mark Jacob Siedner et al. · Nature Communications Open access 2 Dec 2019 153
43 Why do people use electronic nicotine delivery systems (electronic cigarettes)? A content analysis of Twitter, 2012-2015 John W. Ayers, Eric Craig Leas, Jon-Patrick Allem et al. · PLoS ONE Open access Mar 2017 149
44 Role of mass drug administration in elimination of Plasmodium falciparum malaria: a consensus modelling study Oliver J. Brady, Hannah Slater, Peter J. Pemberton-Ross et al. · The Lancet Global Health Open access 29 May 2017 148
45 Assessing the impact of next-generation rapid diagnostic tests on Plasmodium falciparum malaria elimination strategies Hannah Slater, Amanda J Ross, André Lin Ouédraogo et al. · Nature Open access Dec 2015 146
46 Point-of-Care HIV Viral Load Testing: an Essential Tool for a Sustainable Global HIV/AIDS Response Paul K. Drain, Jienchi Dorward, Andrew T. Bender et al. · Clinical Microbiology Reviews Open access 23 May 2019 143
47 Controlling COVID-19 via test-trace-quarantine Cliff C. Kerr, Dina Mistry, Robyn Margaret Stuart et al. · Nature Communications Open access 20 May 2021 139
48 Biocompatible near-infrared quantum dots delivered to the skin by microneedle patches record vaccination Kevin J. McHugh et al. · Science Translational Medicine Open access 18 Dec 2019 136
49 Zooming in on accretion – II. Cold circumgalactic gas simulated with a super-Lagrangian refinement scheme Joshua Suresh, Dylan Nelson, Shy Genel et al. · Monthly Notices of the Royal Astronomical Society Open access 13 Dec 2018 129
50 Implementation and applications of EMOD, an individual-based multi-disease modeling platform Anna Bershteyn et al. · Pathogens and Disease Open access 27 Jun 2018 128

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.