Institution · Joint Genome Institute
Most cited papers from Joint Genome Institute
What are the most cited papers from Joint Genome Institute?
The most cited paper from Joint Genome Institute is "Initial sequencing and analysis of the human genome" (Eric S. Lander et al., 2001), with 24,745 citations. Next come "An integrated encyclopedia of DNA elements in the human genome" (19,751) and "Prodigal: prokaryotic gene recognition and translation initiation site identification" (13,697).
Showing 50 of 60 papers. Every paper with more than 1,314 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | Initial sequencing and analysis of the human genome Eric S. Lander et al. · Nature | Feb 2001 | 24,745 |
| 2 | An integrated encyclopedia of DNA elements in the human genome Ian Dunham et al. · Nature | Sep 2012 | 19,751 |
| 3 | Prodigal: prokaryotic gene recognition and translation initiation site identification Doug Hyatt, Gwo-Liang Chen, Philip F. LoCascio et al. · BMC Bioinformatics | 8 Mar 2010 | 13,697 |
| 4 | Structure, function and diversity of the healthy human microbiome Curtis Huttenhower et al. · Nature | Jun 2012 | 12,195 |
| 5 | Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB Todd Z. DeSantis, Philip Hugenholtz, Nis Elbrønd Larsen et al. · Applied and Environmental Microbiology | Jul 2006 | 11,348 |
| 6 | Initial sequencing and comparative analysis of the mouse genome Asif T. Chinwalla et al. · Nature | Dec 2002 | 7,343 |
| 7 | Phytozome: a comparative platform for green plant genomics David M. Goodstein, Shengqiang Shu, Russell W. Howson et al. · Nucleic Acids Research | 22 Nov 2011 | 5,887 |
| 8 | Diversity, stability and resilience of the human gut microbiota Catherine Lozupone, Jesse Stombaugh, Jeffrey I. Gordon et al. · Nature | Sep 2012 | 5,727 |
| 9 | Genome sequence of the palaeopolyploid soybean Jeremy Schmutz et al. · Nature | 2010 | 4,671 |
| 10 | The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) Gerald A. Tuskan et al. · Science | 15 Sep 2006 | 4,498 |
| 11 | Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Chen-Shan Chin, David H. Alexander, Patrick J. Marks et al. · Nature Methods | 3 May 2013 | 4,380 |
| 12 | MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies Dongwan Don Kang, Feng Li, Edward Kirton et al. · PeerJ | 26 Jul 2019 | 4,119 |
| 13 | Plant–microbiome interactions: from community assembly to plant health Pankaj Trivedi, Jan E. Leach, Susannah Green Tringe et al. · Nature Reviews Microbiology | 12 Aug 2020 | 3,982 |
| 14 | Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease Stefano Romeo, Julia Kozlitina, Chao Xing et al. · Nature Genetics | 25 Sep 2008 | 3,462 |
| 15 | The Sorghum bicolor genome and the diversification of grasses Andrew H. Paterson et al. · Nature | 2009 | 3,257 |
| 16 | Automatic annotation of organellar genomes with DOGMA Stacia K. Wyman, Robert K. Jansen, Jeffrey L. Boore · Bioinformatics | 4 Jun 2004 | 3,124 |
| 17 | VISTA: computational tools for comparative genomics Kelly A. Frazer, Lior S. Pachter, Alexandre Poliakov et al. · Nucleic Acids Research | Jul 2004 | 3,018 |
| 18 | Defining the core Arabidopsis thaliana root microbiome Derek S. Lundberg, Sarah L. Lebeis, Sur Herrera Paredes et al. · Nature | 31 Jul 2012 | 3,001 |
| 19 | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Robert M. Bowers et al. · Nature Biotechnology | Aug 2017 | 2,869 |
| 20 | A framework for human microbiome research Barbara A. Methé et al. · Nature | Jun 2012 | 2,794 |
| 21 | The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions Sabeeha Merchant et al. · Science | 11 Oct 2007 | 2,726 |
| 22 | Expanded encyclopaedias of DNA elements in the human and mouse genomes Federico Abascal et al. · Nature | 29 Jul 2020 | 2,676 |
| 23 | Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LaDeana W. Hillier et al. · Nature | 9 Dec 2004 | 2,532 |
| 24 | Insights into the phylogeny and coding potential of microbial dark matter Christian Rinke et al. · Nature | 12 Jul 2013 | 2,506 |
| 25 | Community structure and metabolism through reconstruction of microbial genomes from the environment Gene W. Tyson, Jarrod Chapman, Philip Hugenholtz et al. · Nature | Feb 2004 | 2,466 |
| 26 | Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions Darío G. Lupiáñez et al. · Cell | May 2015 | 2,334 |
| 27 | Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Joëlle Sasse, Enrico Martinoia, Trent R. Northen · Trends in Plant Science | 17 Oct 2017 | 2,290 |
| 28 | Phased diploid genome assembly with single-molecule real-time sequencing Chen-Shan Chin, Paul Peluso, Fritz Joachim Sedlazeck et al. · Nature Methods | 17 Oct 2016 | 2,256 |
| 29 | Genome sequence of the Brown Norway rat yields insights into mammalian evolution Richard A. Gibbs et al. · Nature | Apr 2004 | 2,224 |
| 30 | Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO 2 Fixation Aaron M. Appel, John E. Bercaw, Andrew B. Bocarsly et al. · Chemical Reviews | 14 Jun 2013 | 2,176 |
| 31 | MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities Dongwan Don Kang, Jeff L. Froula, Rob S Egan et al. · PeerJ | 27 Aug 2015 | 2,161 |
| 32 | AmiGO: online access to ontology and annotation data Seth J Carbon, Amelia Ireland, Chris Mungall et al. · Bioinformatics | 25 Nov 2008 | 2,103 |
| 33 | The Genome of the Diatom Thalassiosira Pseudonana : Ecology, Evolution, and Metabolism E. Virginia Armbrust et al. · Science | 30 Sep 2004 | 2,024 |
| 34 | Genomic variation in 3,010 diverse accessions of Asian cultivated rice Wensheng Wang et al. · Nature | 20 Apr 2018 | 1,924 |
| 35 | CheckV assesses the quality and completeness of metagenome-assembled viral genomes Stephen Nayfach, Antônio Pedro Camargo, Frederik Schulz et al. · Nature Biotechnology | 21 Dec 2020 | 1,899 |
| 36 | Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy Christian M. K. Sieber, Alexander J. Probst, Allison M. Sharrar et al. · Nature Microbiology | 25 May 2018 | 1,899 |
| 37 | The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants Stefan Andreas Rensing et al. · Science | 13 Dec 2007 | 1,887 |
| 38 | The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes Dimitrios Floudas et al. · Science | 28 Jun 2012 | 1,840 |
| 39 | Diversity and heritability of the maize rhizosphere microbiome under field conditions Jason A. Peiffer, Aymé Spor, Omry Koren et al. · Proceedings of the National Academy of Sciences | Apr 2013 | 1,834 |
| 40 | BBMerge – Accurate paired shotgun read merging via overlap Brian Bushnell, Jonathan Rood, Esther Singer · PLoS ONE | 26 Oct 2017 | 1,741 |
| 41 | Comparative Metagenomics of Microbial Communities Susannah Green Tringe, Christian von Mering, Arthur Kobayashi et al. · Science | 21 Apr 2005 | 1,718 |
| 42 | The Phaeodactylum genome reveals the evolutionary history of diatom genomes Chris Bowler et al. · Nature | 15 Oct 2008 | 1,712 |
| 43 | The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins Paramvir Dehal et al. · Science | 12 Dec 2002 | 1,660 |
| 44 | The amphioxus genome and the evolution of the chordate karyotype Nicholas H. Putnam et al. · Nature | Jun 2008 | 1,638 |
| 45 | Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes Samuel A. J. R. Aparicio et al. · Science | 23 Aug 2002 | 1,634 |
| 46 | MycoCosm portal: gearing up for 1000 fungal genomes Igor V. Grigoriev, Roman Nikitin, Sajeet Haridas et al. · Nucleic Acids Research | Dec 2013 | 1,631 |
| 47 | Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization Nicholas H. Putnam, Mansi Srivastava, Uffe Hellsten et al. · Science | 5 Jul 2007 | 1,623 |
| 48 | Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate Paramvir Dehal, Jeffrey L. Boore · PLoS Biology | 29 Aug 2005 | 1,594 |
| 49 | A Common Allele on Chromosome 9 Associated with Coronary Heart Disease Ruth McPherson, Alexander Pertsemlidis, Nihan Kavaslar et al. · Science | 3 May 2007 | 1,593 |
| 50 | A unified catalog of 204,938 reference genomes from the human gut microbiome Alexandre Almeida, Stephen Nayfach, Miguel A. Boland et al. · Nature Biotechnology | 20 Jul 2020 | 1,527 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.