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Most cited papers from New Mexico Consortium

What are the most cited papers from New Mexico Consortium?

The most cited paper from New Mexico Consortium is "Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix" (Dorothee Claudia Liebschner et al., 2019), with 7,679 citations. Next come "Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus" (4,487) and "Real-space refinement in PHENIX for cryo-EM and crystallography" (3,869).

Showing 50 of 60 papers. Every paper with more than 107 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix Dorothee Claudia Liebschner et al. · Acta Crystallographica Section D Structural Biology Open access Oct 2019 7,679
2 Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus Bette Korber et al. · Cell Open access 2 Jul 2020 4,487
3 Real-space refinement in PHENIX for cryo-EM and crystallography Pavel V. Afonine, Billy K. Poon, Randy J. Read et al. · Acta Crystallographica Section D Structural Biology Open access 30 May 2018 3,869
4 New tools for the analysis and validation of cryo-EM maps and atomic models Pavel V. Afonine, Bruno P. Klaholz, Nigel W. Moriarty et al. · Acta Crystallographica Section D Structural Biology Open access Sep 2018 878
5 Options for Control of Reactive Power by Distributed Photovoltaic Generators Konstantin S. Turitsyn, Petr Šulc, Scott Backhaus et al. · Proceedings of the IEEE Open access 17 May 2011 788
6 Threshold Saturation via Spatial Coupling: Why Convolutional LDPC Ensembles Perform So Well over the BEC Shrinivas Kudekar, Thomas J. Richardson, Rüdiger L. Urbanke · IEEE Transactions on Information Theory Open access 21 Jan 2011 546
7 Acceleration and loss of relativistic electrons during small geomagnetic storms B. Anderson, Robyn M. Millan, G. D. Reeves et al. · Geophysical Research Letters Open access 10 Nov 2015 517
8 Emergence of SARS-CoV-2 through recombination and strong purifying selection Xiaojun Li, Elena E. Giorgi, Manukumar Honnayakanahalli Marichannegowda et al. · Science Advances Open access 29 May 2020 426
9 AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination Thomas C. Terwilliger, Dorothee Claudia Liebschner, Tristan Ian Croll et al. · Nature Methods Open access 30 Nov 2023 385
10 Strategies for HIV-1 vaccines that induce broadly neutralizing antibodies Barton F. Haynes, Kevin J. Wiehe, Persephone Borrow et al. · Nature reviews. Immunology ReviewOpen access 12 Aug 2022 379
11 Automated map sharpening by maximization of detail and connectivity Thomas C. Terwilliger, Oleg V. Sobolev, Pavel V. Afonine et al. · Acta Crystallographica Section D Structural Biology Open access 18 May 2018 337
12 Improvement of cryo-EM maps by density modification Thomas C. Terwilliger, Steven J. Ludtke, Randy J. Read et al. · Nature Methods Open access 17 Aug 2020 332
13 Optimal Distributed Control of Reactive Power Via the Alternating Direction Method of Multipliers Petr Šulc, Scott Backhaus, Michael Chertkov · IEEE Transactions on Energy Conversion Open access 20 Nov 2014 328
14 Broadly targeted CD8 + T cell responses restricted by major histocompatibility complex E Scott G. Hansen et al. · Science Open access 21 Jan 2016 301
15 Multiple lineages of monkeypox virus detected in the United States, 2021–2022 Crystal M. Gigante et al. · Science Open access 20 Oct 2022 287
16 Robustness and evolvability in genetic regulatory networks Maximino Aldana, Enrique Balleza, Stuart Alan Kauffman et al. · Journal of Theoretical Biology 2 Nov 2006 283
17 Optimization of photosynthetic light energy utilization by microalgae Zoee Perrine, Sangeeta Negi, Richard T. Sayre · Algal Research Open access 28 Jul 2012 273
18 Energy‐dependent dynamics of keV to MeV electrons in the inner zone, outer zone, and slot regions G. D. Reeves, Reiner H. W. Friedel, Brian A. Larsen et al. · Journal of Geophysical Research Space Physics Open access 29 Dec 2015 223
19 HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design Christine A. Bricault et al. · Cell Host & Microbe Open access 2019 201
20 Local Control of Reactive Power by Distributed Photovoltaic Generators Konstantin S. Turitsyn, Petr Šulc, Scott Backhaus et al. Conference paperOpen access Oct 2010 200
21 New science in plain sight: Citizen scientists lead to the discovery of optical structure in the upper atmosphere Elizabeth A. MacDonald, E. Donovan, Y. Nishimura et al. · Science Advances Open access 2 Mar 2018 196
22 A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps Thomas C. Terwilliger, Paul D. Adams, Pavel V. Afonine et al. · Nature Methods Open access 18 Oct 2018 194
23 Defining the risk of SARS-CoV-2 variants on immune protection Marciela M. DeGrace et al. · Nature Open access130 authors 31 Mar 2022 186
24 Neutrino quantum kinetics Alexey Vlasenko, George M. Fuller, Vincenzo Cirigliano · Physical review. D. Particles, fields, gravitation, and cosmology/Physical review. D. Particles and fields Open access 7 May 2014 186
25 In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness Ruian Ke, Carolin Zitzmann, David D. Ho et al. · Proceedings of the National Academy of Sciences Open access 2 Dec 2021 185
26 Response of the Atlantic Ocean circulation to Greenland Ice Sheet melting in a strongly‐eddying ocean model Wilbert Weijer, Mathew E Maltrud, Matthew Hecht et al. · Geophysical Research Letters Open access 12 Apr 2012 185
27 Constraining the top-Higgs sector of the standard model effective field theory Vincenzo Cirigliano, Wouter Dekens, Jordy de Vries et al. · Physical review. D/Physical review. D. Open access 19 Aug 2016 184
28 COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures Emily Hawkes, Scott P. Hennelly, Irina Vasilievna Novikova et al. · Cell Reports Open access Sep 2016 174
29 Practical compressive sensing with Toeplitz and circulant matrices Wotao Yin, Simon P. Morgan, Junfeng Yang et al. · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE Conference paper 27 May 2010 174
30 A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2 Kwang Su Kim, Keisuke Ejima, Shoya Iwanami et al. · PLoS Biology Open access 22 Mar 2021 171
31 Extending Cassava Root Shelf Life via Reduction of Reactive Oxygen Species Production Tawanda Zidenga, Elisa Leyva-Guerrero, Hangsik Moon et al. · PLANT PHYSIOLOGY Open access 18 Jun 2012 166
32 A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage Zhihong Xue, Scott P. Hennelly, Boryana Doyle et al. · Molecular Cell Open access 12 Sep 2016 163
33 A neutrinoless double beta decay master formula from effective field theory Vincenzo Cirigliano, Wouter Dekens, Jordy de Vries et al. · Journal of High Energy Physics Open access Dec 2018 161
34 The non-targeted effects of radiation are perpetuated by exosomes Ammar H. J. Al-Mayah, Scott J. Bright, Kim L. Chapman et al. · Mutation research. Fundamental and molecular mechanisms of mutagenesis 30 Dec 2014 161
35 Measurement of magnetic field and relativistic electrons along a solar flare current sheet Bin Chen, Chengcai Shen, Dale E. Gary et al. · Nature Astronomy Open access 27 Jul 2020 158
36 AMF: The future prospect for sustainable agriculture Supratim Basu, Roel Rabara, Sangeeta Negi · Physiological and Molecular Plant Pathology 21 Nov 2017 158
37 Impact of nitrogen limitation on biomass, photosynthesis, and lipid accumulation in Chlorella sorokiniana Sangeeta Negi, Amanda N. Barry, Natalia Friedland et al. · Journal of Applied Phycology 6 Jul 2015 154
38 Right-handed charged currents in the era of the Large Hadron Collider Simone Alioli, Vincenzo Cirigliano, Wouter Dekens et al. · Journal of High Energy Physics Open access May 2017 151
39 Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement T.V. Budkevich, Jan Giesebrecht, Elmar Behrmann et al. · Cell Open access Jul 2014 151
40 Safety and antiviral activity of triple combination broadly neutralizing monoclonal antibody therapy against HIV-1: a phase 1 clinical trial Boris Dominik Jülg et al. · Nature Medicine Open access 12 May 2022 146
41 Initial risk assessment of genetically modified (GM) microalgae for commodity-scale biofuel cultivation William J. Henley, Richard Wayne Litaker, Lucie Novoveská et al. · Algal Research 27 Nov 2012 141
42 Improved AlphaFold modeling with implicit experimental information Thomas C. Terwilliger, Billy K. Poon, Pavel V. Afonine et al. · Nature Methods Open access 20 Oct 2022 139
43 Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu Chi-Min Ho, Xiaorun Li, Mason Lai et al. · Nature Methods Open access 25 Nov 2019 138
44 Phytochrome and Phytohormones: Working in Tandem for Plant Growth and Development Panagiotis Lymperopoulos, Joseph Msanne, Roel Rabara · Frontiers in Plant Science Open access 27 Jul 2018 138
45 Engineering PGPMOs through Gene Editing and Systems Biology: A Solution for Phytoremediation? Supratim Basu, Roel Rabara, Sangeeta Negi et al. · Trends in biotechnology Review 15 Feb 2018 136
46 Comparative energetics and kinetics of autotrophic lipid and starch metabolism in chlorophytic microalgae: implications for biomass and biofuel production Subramanian Sowmya, Amanda N. Barry, Shayani Pieris et al. · Biotechnology for Biofuels Open access 19 Oct 2013 131
47 Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations Jaewoon Jung, Wataru Nishima, Marcus Daniels et al. · Journal of Computational Chemistry Open access 17 Apr 2019 126
48 Vaccines and Broadly Neutralizing Antibodies for HIV-1 Prevention Kathryn E. Stephenson, Kshitij Wagh, Bette Korber et al. · Annual Review of Immunology ReviewOpen access 26 Apr 2020 125
49 Fail-Slow at Scale Haryadi S. Gunawi et al. · ACM Transactions on Storage Open access 31 Aug 2018 123
50 Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge Catherine L. Lawson et al. · Nature Methods Open access Feb 2021 122

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.