Most cited papers from OpGen (United States)

OpGen (United States)

What are the most cited papers from OpGen (United States)?

The most cited paper from OpGen (United States) is "The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models" (Leming M. Shi et al., 2010), with 922 citations. Next come "Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology" (775) and "Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)" (550).

Published TypeFieldAccessAuthorsCitations

Showing 50 of 58 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models Leming M. Shi et al. · Nature Biotechnology Open access201 authors	30 Jul 2010	922
2	Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology Alexander Mellmann, Dag Harmsen, Craig A. Cummings et al. · PLoS ONE Open access	20 Jul 2011	775
3	Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus) Yang Dong et al. · Nature Biotechnology Open access	23 Dec 2012	550
4	Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli Colin Raeside, Joël Gaffé, Daniel E. Deatherage et al. · mBio Open access	9 Sep 2014	163
5	Transgenic American chestnuts show enhanced blight resistance and transmit the trait to T1 progeny Andrew E. Newhouse, Linda D. Polin‐McGuigan, Kathleen A. Baier et al. · Plant Science	13 Apr 2014	138
6	Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella Srikar Chamala, André S. Chanderbali, Joshua P. Der et al. · Science	19 Dec 2013	100
7	Optical mapping as a routine tool for bacterial genome sequence finishing Phil Latreille, Stacie Norton, Barry S. Goldman et al. · BMC Genomics Open access	14 Sep 2007	99
8	Beneficial Effect of β-Mannanase Feed Enzyme on Performance of Chicks Challenged with Eimeria sp. and Clostridium perfringens Mark Jackson, D. M. Anderson, H. Y. Hsiao et al. · Avian Diseases	Jul 2003	96
9	Molecular cloning of a proteolytic antibody light chain. Qingsheng Gao, Mengxing Sun, Sonia Tyutyulkova et al. · Journal of Biological Chemistry Open access	Dec 1994	74
10	Multicenter Evaluation of the Unyvero Platform for Testing Bronchoalveolar Lavage Fluid Matthias Klein, Johannes Bacher, Sandra Barth et al. · Journal of Clinical Microbiology Open access	16 Dec 2020	69
11	Whole-Genome Shotgun Optical Mapping of Rhodospirillum rubrum Susan Reslewic, Shiguo Zhou, Mike Place et al. · Applied and Environmental Microbiology	Sep 2005	67
12	Improvements in Agrobacterium-mediated transformation of cassava (Manihot esculenta Crantz) for large-scale production of transgenic plants Raj Deepika Chauhan, Getu Beyene, M. A. Kalyaeva et al. · Plant Cell Tissue and Organ Culture (PCTOC)	16 Apr 2015	60
13	Hyaline Cartilage Regeneration Using Mixed Human Chondrocytes and Transforming Growth Factor-β 1 - Producing Chondrocytes Sun U. Song, Young-Deog Cha, Jeoung-Uk Han et al. · Tissue Engineering	Sep 2005	49
14	Rapid Molecular Diagnostics to Inform Empiric Use of Ceftazidime/Avibactam and Ceftolozane/Tazobactam Against Pseudomonas aeruginosa: PRIMERS IV Scott R. Evans, Thuy Tien T. Tran, Andrea M. Hujer et al. · Clinical Infectious Diseases Open access	18 Sep 2018	48
15	Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes P. Turner, Lorraine P. Yomano, Laura R. Jarboe et al. · Journal of Industrial Microbiology & Biotechnology Open access	10 Nov 2011	44
16	PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus Yongil Yang, Chang Geun Yoo, William H. Rottmann et al. · BMC Plant Biology Open access	11 Nov 2019	43
17	Continuous Transforming Growth Factor β 1 Secretion by Cell-Mediated Gene Therapy Maintains Chondrocyte Redifferentiation Dug Keun Lee, Kyoung Baek Choi, In Suk Oh et al. · Tissue Engineering	2005	42
18	Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae Marilynn A. Larson, Ufuk Nalbantoğlu, Khalid Sayood et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY	8 Jan 2016	40
19	Optical Mapping Reveals a Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains Sanjay Kumar Shukla, Jennifer Kislow, Adam M. Briska et al. · Journal of Bacteriology Open access	20 Jun 2009	33
20	Predicting Antibiotic Resistance in Gram-Negative Bacilli from Resistance Genes G. Terrance Walker, Julia Quan, Stephen G. Higgins et al. · Antimicrobial Agents and Chemotherapy Open access	25 Jan 2019	31
21	Multiplex Protein Analysis to Determine Fibrosis Stage and Progression in Patients With Chronic Hepatitis C Keyur Patel, Katja S. Remlinger, Terence G. Walker et al. · Clinical Gastroenterology and Hepatology Open access	9 May 2014	29
22	Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus Jin Zhang et al. · PLANT PHYSIOLOGY Open access	3 Jul 2023	28
23	Comparative Whole-Genome Mapping To Determine Staphylococcus aureus Genome Size, Virulence Motifs, and Clonality Sanjay Kumar Shukla, Madhulatha Pantrang, Buffy Stahl et al. · Journal of Clinical Microbiology Open access	22 Aug 2012	28
24	Classification of BRCA2 Variants of Uncertain Significance (VUS) Using an ACMG/AMP Model Incorporating a Homology-Directed Repair (HDR) Functional Assay Chunling Hu, Lisa R. Susswein, Maegan E. Roberts et al. · Clinical Cancer Research Open access	23 Jun 2022	25
25	Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity Carol Chapman, Matthew Henry, Kimberly A. Bishop‐Lilly et al. · PLoS ONE Open access	20 Mar 2015	24
26	Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups William R. Schwan, Adam M. Briska, Buffy Stahl et al. · Microbiology Open access	8 Apr 2010	22
27	Association of Previous Measles Infection With Markers of Acute Infectious Disease Among 9- to 59-Month-Old Children in the Democratic Republic of the Congo Hayley R. Ashbaugh, James D. Cherry, Nicole A. Hoff et al. · Journal of the Pediatric Infectious Diseases Society Open access	10 Oct 2018	19
28	Management of Pediatric Supracondylar Humerus Fractures Michael H. Heggeness, James O. Sanders, Jayson N. Murray et al. · Journal of the American Academy of Orthopaedic Surgeons	25 Sep 2015	16
29	Thermal Conductivity Measurement of CVD Diamond Films Using a Modified Thermal Comparator Method Kumar R. Cheruparambil, Bakhtier Farouk, Joseph E. Yehoda et al. · ASME Journal of Heat and Mass Transfer	9 May 2000	16
30	Functional and Clinical Characterization of Variants of Uncertain Significance Identifies a Hotspot for Inactivating Missense Variants in RAD51C Chunling Hu et al. · Cancer Research Open access	30 May 2023	15
31	Whole-genome typing and characterization of bla VIM19 -harbouring ST383 Klebsiella pneumoniae by PFGE, whole-genome mapping and WGS Julia S. Sabirova, Basil Britto Xavier, Jasmine Coppens et al. · Journal of Antimicrobial Chemotherapy	10 Mar 2016	15
32	Tolerability of Anal Dysplasia Screening Tony W. Davis, Stephen E. Goldstone, Guorong Chen · Journal of Lower Genital Tract Disease	20 Apr 2013	15
33	Healthcare Antibiotic Resistance Prevalence – DC (HARP-DC): A Regional Prevalence Assessment of Carbapenem-Resistant Enterobacteriaceae (CRE) in Healthcare Facilities in Washington, District of Columbia Jacqueline Reuben et al. · Infection Control and Hospital Epidemiology	15 Jun 2017	14
34	Evidence of Mumps Infection Among Children in the Democratic Republic of Congo Reena Hemendra Doshi, Vivian H. Alfonso, Nicole A. Hoff et al. · The Pediatric Infectious Disease Journal	20 Dec 2016	14
35	Clearance of Vancomycin-Resistant Enterococcus Colonization With Fecal Microbiota Transplantation Among Patients With Recurrent Clostridium difficile Infection Lindsay M. Eysenbach, Jessica R. Allegretti, Olga C. Aroniadis et al. · Open Forum Infectious Diseases Open access	2016	14
36	Predicting Novel Therapies and Targets: Regulation of Notch3 by the Bromodomain Protein BRD4 Alejandro Villar‐Prados, Sherry Y. Wu, Karem A. Court et al. · Molecular Cancer Therapeutics Open access	12 Nov 2018	12
37	Prevalence of Rubella Antibodies Among Children in the Democratic Republic of the Congo Vivian H. Alfonso, Reena Hemendra Doshi, Patrick Kakoni Mukadi et al. · The Pediatric Infectious Disease Journal	25 Jul 2017	12
38	Assessment of Whole-Genome Mapping in a Well-Defined Outbreak of Salmonella enterica Serotype Saintpaul Paul D. Fey, Peter C. Iwen, Emily B. Zentz et al. · Journal of Clinical Microbiology Open access	21 Jun 2012	12
39	Analytical Performance of Multiplexed Screening Test for 10 Antibiotic Resistance Genes from Perianal Swab Samples G. Terrance Walker, Tony J. Rockweiler, Rossio K. Kersey et al. · Clinical Chemistry	5 Dec 2015	11
40	Francisella tularensis Subtype A.II Genomic Plasticity in Comparison with Subtype A.I Marilynn A. Larson, Ufuk Nalbantoğlu, Khalid Sayood et al. · PLoS ONE Open access	28 Apr 2015	11
41	Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection of an Extended Panel of Antimicrobial Resistance Genes among Bacterial Isolates Patricia J. Simner, Kimberlee Arruda Musser, Kara K. Mitchell et al. · Journal of Clinical Microbiology Open access	9 Feb 2022	10
42	Core genome MLST and resistome analysis of Klebsiella pneumoniae using a clinically amenable workflow Madiha Fida, Scott A. Cunningham, Matthew Philip Murphy et al. · Diagnostic Microbiology and Infectious Disease Open access	20 Jan 2020	10
43	Low Varicella Zoster Virus Seroprevalence Among Young Children in the Democratic Republic of the Congo Reena Hemendra Doshi, Vivian H. Alfonso, Patrick Kakoni Mukadi et al. · The Pediatric Infectious Disease Journal Open access	22 Aug 2017	9
44	An Optimized Protocol for Indirect Organogenesis from Root Explants of Agapanthus praecox subsp. orientalis ‘Big Blue’ Qianwen Tang, Xiangxin Guo, Yuanshan Zhang et al. · Horticulturae Open access	9 Aug 2022	8
45	Germline and Somatic NF1 Alterations Are Linked to Increased HER2 Expression in Breast Cancer Xia Wang, Roope A. Kallionpää, Patrick R. Gonzales et al. · Cancer Prevention Research Open access	13 Aug 2018	8
46	Genomic prediction for fusiform rust disease incidence in a large cloned population ofPinus taeda Mohammad Nasir Shalizi, W. Patrick Cumbie, Fikret Işik · G3 Genes Genomes Genetics Open access	22 Jul 2021	7
47	Investigation of a Candida guilliermondii Pseudo-outbreak Reveals a Novel Source of Laboratory Contamination James E. Kirby, Westyn Branch‐Elliman, Mary T. LaSalvia et al. · Journal of Clinical Microbiology Open access	19 Jan 2017	7
48	Clinical evaluation of the acuitas® AMR gene panel for rapid detection of bacteria and genotypic antibiotic resistance determinants Stefan F. Riedel, Justin B.L. Halls, Sanjucta Dutta et al. · Diagnostic Microbiology and Infectious Disease	26 Mar 2021	5
49	Assessing economic and environmental feasibility of wood-based electricity generation in South America: A case study from Colombia Farhad Hossain Masum, Puneet Dwivedi, Rafael de la Torre · Forest Policy and Economics Open access	29 Dec 2020	5
50	Feasibility and acceptance of a Cloud-based mobile app for antimicrobial stewardship and infection prevention in Colombian hospitals William J Ketcherside, Jonathan Olson, Lauren N. Hunt et al. · International journal of infection control Open access	23 Jul 2020	5

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.