Institution · Pacific Biosciences (United States)
Most cited papers from Pacific Biosciences (United States)
What are the most cited papers from Pacific Biosciences (United States)?
The most cited paper from Pacific Biosciences (United States) is "STAR: ultrafast universal RNA-seq aligner" (Alexander Yu. Dobin, Carrie Davis, Felix Schlesinger et al., 2012), with 58,026 citations. Next come "Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm" (5,964) and "A second generation human haplotype map of over 3.1 million SNPs" (4,615).
Showing 50 of 60 papers. Every paper with more than 484 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | STAR: ultrafast universal RNA-seq aligner Alexander Yu. Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics | 25 Oct 2012 | 58,026 |
| 2 | Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng et al. · Nature Methods | Feb 2021 | 5,964 |
| 3 | A second generation human haplotype map of over 3.1 million SNPs Sarah Shaw Murray et al. · Nature | Oct 2007 | 4,615 |
| 4 | Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Chen-Shan Chin, David H. Alexander, Patrick J. Marks et al. · Nature Methods | 3 May 2013 | 4,380 |
| 5 | The B73 Maize Genome: Complexity, Diversity, and Dynamics Patrick S. Schnable et al. · Science | 20 Nov 2009 | 4,265 |
| 6 | Real-Time DNA Sequencing from Single Polymerase Molecules John S. Eid et al. · Science | 20 Nov 2008 | 3,878 |
| 7 | The complete sequence of a human genome Sergey Nurk et al. · Science | 31 Mar 2022 | 3,475 |
| 8 | Towards complete and error-free genome assemblies of all vertebrate species Arang Rhie et al. · Nature | 28 Apr 2021 | 3,311 |
| 9 | Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index MAGIC et al. · Nature Genetics | 10 Oct 2010 | 2,999 |
| 10 | Phased diploid genome assembly with single-molecule real-time sequencing Chen-Shan Chin, Paul Peluso, Fritz Joachim Sedlazeck et al. · Nature Methods | 17 Oct 2016 | 2,256 |
| 11 | Hundreds of variants clustered in genomic loci and biological pathways affect human height Hana Lango Allen et al. · Nature | 29 Sep 2010 | 2,063 |
| 12 | Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome Aaron M. Wenger et al. · Nature Biotechnology | 12 Aug 2019 | 2,046 |
| 13 | Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease Cardiogenics et al. · Nature Genetics | 6 Mar 2011 | 1,959 |
| 14 | Lebrikizumab Treatment in Adults with Asthma Jonathan Corren, Robert F. Lemanske, Nicola Alexander Hanania et al. · New England Journal of Medicine | 3 Aug 2011 | 1,523 |
| 15 | Direct detection of DNA methylation during single-molecule, real-time sequencing Benjamin A. Flusberg, Dale R. Webster, Jessica Heejong Lee et al. · Nature Methods | 9 May 2010 | 1,516 |
| 16 | Improved maize reference genome with single-molecule technologies Yinping Jiao et al. · Nature | Jun 2017 | 1,375 |
| 17 | Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory Mark Chaisson, Glenn Tesler · BMC Bioinformatics | 19 Sep 2012 | 1,371 |
| 18 | Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly Valérie Schneider et al. · Genome Research | 10 Apr 2017 | 1,345 |
| 19 | Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Kanchon K. Dasmahapatra et al. · Nature | 15 May 2012 | 1,312 |
| 20 | Variant Review with the Integrative Genomics Viewer James Theodore Robinson, Helga Thorvaldsdóttir, Aaron M. Wenger et al. · Cancer Research | 31 Oct 2017 | 1,279 |
| 21 | Climate change and the South Asian summer monsoon Andrew George Turner, Hariharasubramanian Annamalai · Nature Climate Change | 21 Jun 2012 | 1,134 |
| 22 | Deep Learning–Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer Kumardeep Chaudhary, Olivier Poirion, Liangqun Lu et al. · Clinical Cancer Research | 5 Oct 2017 | 1,128 |
| 23 | The vaginal microbiome and preterm birth Jennifer M. Fettweis et al. · Nature Medicine | 29 May 2019 | 1,069 |
| 24 | Multi-platform discovery of haplotype-resolved structural variation in human genomes Mark Chaisson et al. · Nature Communications | 16 Apr 2019 | 1,053 |
| 25 | Assembling large genomes with single-molecule sequencing and locality-sensitive hashing Konstantin Berlin, Sergey Koren, Chen-Shan Chin et al. · Nature Biotechnology | 25 May 2015 | 1,024 |
| 26 | Genome-Wide Association Analysis Identifies Variants Associated with Nonalcoholic Fatty Liver Disease That Have Distinct Effects on Metabolic Traits Elizabeth K. Speliotes et al. · PLoS Genetics | 10 Mar 2011 | 1,021 |
| 27 | Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution MAGIC et al. · Nature Genetics | 10 Oct 2010 | 965 |
| 28 | A window into third-generation sequencing E. E. Schadt, Steve Turner, A. Kasarskis · Human Molecular Genetics | 21 Sep 2010 | 963 |
| 29 | De novo assembly of the cattle reference genome with single-molecule sequencing Benjamin D. Rosen et al. · GigaScience | Mar 2020 | 943 |
| 30 | Resolving the complexity of the human genome using single-molecule sequencing Mark Chaisson, John Huddleston, Megan Y. Dennis et al. · Nature | 10 Nov 2014 | 907 |
| 31 | The Sixth Mass Extinction: fact, fiction or speculation? Robert H. Cowie, Philippe Bouchet, Benoît Fontaine · Biological reviews/Biological reviews of the Cambridge Philosophical Society | 10 Jan 2022 | 867 |
| 32 | Molecular networks as sensors and drivers of common human diseases Eric E. Schadt · Nature | Sep 2009 | 860 |
| 33 | HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads Sergey Nurk, Brian P. Walenz, Arang Rhie et al. · Genome Research | 14 Aug 2020 | 853 |
| 34 | Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany David A. Rasko et al. · New England Journal of Medicine | 27 Jul 2011 | 836 |
| 35 | Haplotype-resolved diverse human genomes and integrated analysis of structural variation Peter Ebert et al. · Science | 25 Feb 2021 | 825 |
| 36 | Environmental application of biochar: Current status and perspectives Fernanda R. Oliveira, Anil Kumar Patel, Deb P. Jaisi et al. · Bioresource Technology | 22 Aug 2017 | 803 |
| 37 | Anaerobic digestion of lignocellulosic biomass: Challenges and opportunities Chayanon Sawatdeenarunat, K.C. Surendra, Devin Takara et al. · Bioresource Technology | 8 Oct 2014 | 767 |
| 38 | The Origin of the Haitian Cholera Outbreak Strain Chen-Shan Chin, Jon M. Sorenson, Jason B. Harris et al. · New England Journal of Medicine | 9 Dec 2010 | 765 |
| 39 | Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia Catherine Choy Smith, Qi Wang, Chen-Shan Chin et al. · Nature | 15 Apr 2012 | 757 |
| 40 | More Is Better: Recent Progress in Multi-Omics Data Integration Methods Sijia Huang, Kumardeep Chaudhary, Lana X. Garmire · Frontiers in Genetics | 16 Jun 2017 | 740 |
| 41 | High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution Benjamin J. Callahan, Joan Wong, Cheryl R. Heiner et al. · Nucleic Acids Research | 20 Jun 2019 | 739 |
| 42 | Food webs: reconciling the structure and function of biodiversity Ross M. Thompson, Ulrich Brose, Jennifer A. Dunne et al. · Trends in Ecology & Evolution | 7 Nov 2012 | 717 |
| 43 | TGFα overexpression in transgenic mice induces liver neoplasia and abnormal development of the mammary gland and pancreas Chamelli Jhappan, Cheryl Stahle, Richard N. Harkins et al. · Cell | Jun 1990 | 716 |
| 44 | Improved reference genome of Aedes aegypti informs arbovirus vector control Benjamin John Matthews et al. · Nature | 14 Nov 2018 | 695 |
| 45 | DNA methylation on N6-adenine in mammalian embryonic stem cells Tao Wu, Tao Wang, Matthew G. Seetin et al. · Nature | 29 Mar 2016 | 680 |
| 46 | Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing Bo Wang, Elizabeth Tseng, Michael Regulski et al. · Nature Communications | 24 Jun 2016 | 661 |
| 47 | Allometric scaling enhances stability in complex food webs Ulrich Brose, Richard J. Williams, Neo D. Martinez · Ecology Letters | 13 Oct 2006 | 650 |
| 48 | Computational solutions to large-scale data management and analysis Eric E. Schadt, Michael D. Linderman, Jon M. Sorenson et al. · Nature Reviews Genetics | 18 Aug 2010 | 645 |
| 49 | Toxicopathological Effects of the Sunscreen UV Filter, Oxybenzone (Benzophenone-3), on Coral Planulae and Cultured Primary Cells and Its Environmental Contamination in Hawaii and the U.S. Virgin Islands Craig A. Downs, Esti Kramarsky‐Winter, Roee Segal et al. · Archives of Environmental Contamination and Toxicology | 20 Oct 2015 | 642 |
| 50 | De novo assembly of haplotype-resolved genomes with trio binning Sergey Koren, Arang Rhie, Brian P. Walenz et al. · Nature Biotechnology | 22 Oct 2018 | 632 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.