Institution · Pittsburgh Supercomputing Center
Most cited papers from Pittsburgh Supercomputing Center
What are the most cited papers from Pittsburgh Supercomputing Center?
The most cited paper from Pittsburgh Supercomputing Center is "De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis" (Brian J. Haas et al., 2013), with 9,312 citations. Next come "XSEDE: Accelerating Scientific Discovery" (3,332) and "The macroscopic behavior of the TCP congestion avoidance algorithm" (1,504).
Showing 50 of 60 papers. Every paper with more than 121 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis Brian J. Haas et al. · Nature Protocols | 11 Jul 2013 | 9,312 |
| 2 | XSEDE: Accelerating Scientific Discovery John W. Towns, Timothy M. Cockerill, Maytal Dahan et al. · Computing in Science & Engineering | 25 Jul 2014 | 3,332 |
| 3 | The macroscopic behavior of the TCP congestion avoidance algorithm Matthew Mathis, Jeffrey Semke, Jamshid Mahdavi et al. · ACM SIGCOMM Computer Communication Review | Jul 1997 | 1,504 |
| 4 | Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software Alexander Sczyrba et al. · Nature Methods | 2 Oct 2017 | 983 |
| 5 | Network anatomy and in vivo physiology of visual cortical neurons Davi D. Bock, Wei-Chung Allen Lee, Aaron Kerlin et al. · Nature | Mar 2011 | 954 |
| 6 | FCC-ee: The Lepton Collider Asmâa Abada et al. · The European Physical Journal Special Topics | Jun 2019 | 950 |
| 7 | Multidimensional free‐energy calculations using the weighted histogram analysis method Shankar Kumar, John M. Rosenberg, Djamal Bouzida et al. · Journal of Computational Chemistry | Nov 1995 | 886 |
| 8 | The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Writing Group et al. · Nature | 9 Oct 2019 | 692 |
| 9 | FCC Physics Opportunities A. Abada et al. · The European Physical Journal C | Jun 2019 | 691 |
| 10 | FCC-hh: The Hadron Collider A. Abada et al. · The European Physical Journal Special Topics | Jul 2019 | 654 |
| 11 | Anatomy and function of an excitatory network in the visual cortex Wei-Chung Allen Lee, Vincent Bonin, Michael F. Reed et al. · Nature | 24 Mar 2016 | 592 |
| 12 | A multimodal cell census and atlas of the mammalian primary motor cortex BRAIN Initiative Cell Census Network (BICCN) et al. · Nature | 6 Oct 2021 | 588 |
| 13 | Variational transition state theory: theoretical framework and recent developments Junwei Lucas Bao, Donald G. Truhlar · Chemical Society Reviews | 2017 | 525 |
| 14 | Computational electrochemistry: prediction of liquid-phase reduction potentials Aleksandr V. Marenich, Junming Ho, Michelle L. Coote et al. · Physical Chemistry Chemical Physics | 2014 | 525 |
| 15 | Never-ending learning Tom M. Mitchell et al. · Communications of the ACM | 24 Apr 2018 | 519 |
| 16 | ACCESS: Advancing Innovation Tim Boerner, Stephen Deems, Thomas R. Furlani et al. · Practice and Experience in Advanced Research Computing | 23 Jul 2023 | 440 |
| 17 | Whole-brain serial-section electron microscopy in larval zebrafish David G. C. Hildebrand et al. · Nature | May 2017 | 419 |
| 18 | A density functional study of the simplest hydrogen abstraction reaction. Effect of self-interaction correction Benny G. Johnson, Carlos A. Gonzales, Peter M. W. Gill et al. · Chemical Physics Letters | Apr 1994 | 355 |
| 19 | The economic and operational value of using drones to transport vaccines Leila A. Haidari, Shawn T. Brown, Marie C. Ferguson et al. · Vaccine | 20 Jun 2016 | 327 |
| 20 | The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus Josh Morgan, Daniel Raimund Berger, Arthur Willis Wetzel et al. · Cell | Mar 2016 | 302 |
| 21 | PLFS John Bent, Garth A. Gibson, Gary Grider et al. | 14 Nov 2009 | 286 |
| 22 | Relationships within the aldehyde dehydrogenase extended family John Perozich, Hugh B. Nicholas, Bi‐Cheng Wang et al. · Protein Science | 1999 | 286 |
| 23 | Efficient nonmeiotic allele introgression in livestock using custom endonucleases Wenfang Spring Tan, Daniel F. Carlson, Cheryl A. Lancto et al. · Proceedings of the National Academy of Sciences | 6 Sep 2013 | 284 |
| 24 | Structural Molecular Dynamics Studies on Polyamidoamine Dendrimers for a Therapeutic Application: Effects of pH and Generation Inhan Lee, Brian D. Athey, Arthur Willis Wetzel et al. · Macromolecules | 20 Apr 2002 | 278 |
| 25 | PSI3: An open‐source Ab Initio electronic structure package T. Daniel Crawford, C. David Sherrill, Edward F. Valeev et al. · Journal of Computational Chemistry | 9 Apr 2007 | 275 |
| 26 | FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations John J. Grefenstette, Shawn T. Brown, Roni Rosenfeld et al. · BMC Public Health | 8 Oct 2013 | 265 |
| 27 | Automatic TCP buffer tuning Jeffrey Semke, Jamshid Mahdavi, Matthew Mathis | Oct 1998 | 254 |
| 28 | A hybrid MPI–OpenMP scheme for scalable parallel pseudospectral computations for fluid turbulence Pablo D. Mininni, Duane Rosenberg, Raghu Reddy et al. · Parallel Computing | 26 May 2011 | 249 |
| 29 | Forward acknowledgement Matthew Mathis, Jamshid Mahdavi | 28 Aug 1996 | 229 |
| 30 | BioWar: scalable agent-based model of bioattacks Kathleen M. Carley, Douglas B. Fridsma, Elizabeth A. Casman et al. · IEEE Transactions on Systems Man and Cybernetics - Part A Systems and Humans | 21 Feb 2006 | 224 |
| 31 | Three Hypervelocity White Dwarfs in Gaia DR2: Evidence for Dynamically Driven Double-degenerate Double-detonation Type Ia Supernovae Ken J. Shen et al. · The Astrophysical Journal | 17 Sep 2018 | 219 |
| 32 | Bridges Nicholas A. Nystrom, Michael J. Levine, Ralph Z. Roskies et al. | 2015 | 210 |
| 33 | Building and using a highly parallel programmable logic array Maya B. Gokhale, William T. “Toby” Holmes, A. Kopser et al. · Computer | 1991 | 201 |
| 34 | HE-LHC: The High-Energy Large Hadron Collider A. Abada et al. · The European Physical Journal Special Topics | Jul 2019 | 200 |
| 35 | Quantifying influenza virus diversity and transmission in humans Leo L. M. Poon, Timothy Song, Roni Rosenfeld et al. · Nature Genetics | 4 Jan 2016 | 199 |
| 36 | Anomalous compressibility of ferropericlase throughout the iron spin cross-over Renata M. M. Wentzcovitch, João F. Justo, Zhongqing Wu et al. · Proceedings of the National Academy of Sciences | 13 May 2009 | 196 |
| 37 | Evidence for Ectopic Neurotransmission at a Neuronal Synapse Jay S. Coggan, Thomas M. Bartol, Eduardo Esquenazi et al. · Science | 14 Jul 2005 | 187 |
| 38 | Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) Sanjay R. Jain et al. · Nature Cell Biology | 19 Jul 2023 | 183 |
| 39 | A systems approach to obesity Bruce Y. Lee, Sarah M. Bartsch, Yeeli Mui et al. · Nutrition Reviews | 16 Nov 2016 | 181 |
| 40 | Aldehyde dehydrogenases: Widespread structural and functional diversity within a shared framework John D. Hempel, Hugh B. Nicholas, Ronald G. Lindahl · Protein Science | Nov 1993 | 176 |
| 41 | The use of end-to-end multicast measurements for characterizing internal network behavior Andrew K. Adams, Tian Bu, Timur Friedman et al. · IEEE Communications Magazine | May 2000 | 170 |
| 42 | High Resolution Forward And Inverse Earthquake Modeling on Terascale Computers V. Akçelik, Jacobo Bielak, George Biros et al. | 15 Nov 2003 | 170 |
| 43 | DISCRIMINATING THE PROGENITOR TYPE OF SUPERNOVA REMNANTS WITH IRON K-SHELL EMISSION Hiroya Yamaguchi, Carles Badenes, Robert Petre et al. · The Astrophysical Journal Letters | 3 Apr 2014 | 170 |
| 44 | Beyond Atomic Sizes and Hume-Rothery Rules: Understanding and Predicting High-Entropy Alloys M. Claudia Troparevsky, James Robert Morris, M. Däne et al. · JOM | 2 Sep 2015 | 170 |
| 45 | Vital Signs: Estimated Effects of a Coordinated Approach for Action to Reduce Antibiotic-Resistant Infections in Health Care Facilities — United States Rachel B. Slayton et al. · MMWR Morbidity and Mortality Weekly Report | 4 Aug 2015 | 163 |
| 46 | Toward the Accurate Modeling of DNA: The Importance of Long-Range Electrostatics Darrin M. York, Weitao Yang, Hsing Lee et al. · Journal of the American Chemical Society | May 1995 | 154 |
| 47 | Overview of the DESI Milky Way Survey Andrew P. Cooper et al. · The Astrophysical Journal | Apr 2023 | 149 |
| 48 | A computer simulation of vaccine prioritization, allocation, and rationing during the 2009 H1N1 influenza pandemic Bruce Y. Lee, Shawn T. Brown, George W. Korch et al. · Vaccine | 19 May 2010 | 147 |
| 49 | Faster Monte Carlo simulations James L. Blue, Isabel M. Beichl, Frank Sullivan · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics | Feb 1995 | 146 |
| 50 | Amidinato– and Guanidinato–Cobalt(I) Complexes: Characterization of Exceptionally Short Co–Co Interactions Cameron J. Jones, Christian Schulten, Richard P. Rose et al. · Angewandte Chemie International Edition | 31 Aug 2009 | 144 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.