Institution · QuantumBio (United States)

Most cited papers from QuantumBio (United States)

QuantumBio (United States)

What are the most cited papers from QuantumBio (United States)?

The most cited paper from QuantumBio (United States) is "Role of miR-2392 in driving SARS-CoV-2 infection" (John Tyson McDonald et al., 2021), with 103 citations. Next come "Feature Selection and Classification of MAQC-II Breast Cancer and Multiple Myeloma Microarray Gene Expression Data" (93) and "Accurate macromolecular crystallographic refinement: incorporation of the linear scaling, semiempirical quantum-mechanics programDivConinto thePHENIXrefinement package" (53).

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Showing 40 of 40 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	Role of miR-2392 in driving SARS-CoV-2 infection John Tyson McDonald et al. · Cell Reports Open access	30 Sep 2021	103
2	Feature Selection and Classification of MAQC-II Breast Cancer and Multiple Myeloma Microarray Gene Expression Data Qingzhong Liu, Andrew H. Sung, Zhongxue Chen et al. · PLoS ONE Open access	10 Dec 2009	93
3	Accurate macromolecular crystallographic refinement: incorporation of the linear scaling, semiempirical quantum-mechanics programDivConinto thePHENIXrefinement package Oleg Ya. Borbulevych, Joshua A. Plumley, Roger I. Martin et al. · Acta Crystallographica Section D Biological Crystallography Open access	26 Apr 2014	53
4	Pairwise Decomposition of Residue Interaction Energies Using Semiempirical Quantum Mechanical Methods in Studies of Protein−Ligand Interaction Kaushik Raha, Arjan van der Vaart, Kevin E. Riley et al. · Journal of the American Chemical Society	15 Apr 2005	45
5	A Critical Assessment of the Performance of Protein−Ligand Scoring Functions Based on NMR Chemical Shift Perturbations Bing Wang, Lance M. Westerhoff, Kenneth M. Merz · Journal of Medicinal Chemistry Open access	15 Sep 2007	34
6	High-throughput quantum-mechanics/molecular-mechanics (ONIOM) macromolecular crystallographic refinement withPHENIX/DivCon: the impact of mixed Hamiltonian methods on ligand and protein structure Oleg Ya. Borbulevych, Roger I. Martin, Lance M. Westerhoff · Acta Crystallographica Section D Structural Biology Open access	29 Oct 2018	27
7	Photoactivated Indium Phosphide Quantum Dots Treat Multidrug-Resistant Bacterial Abscesses In Vivo Colleen R. McCollum, John R. Bertram, Prashant Nagpal et al. · ACS Applied Materials & Interfaces	22 Jun 2021	26
8	Free Energy Calculations Using the Movable Type Method with Molecular Dynamics Driven Protein–Ligand Sampling Wenlang Liu, Zhenhao Liu, Hao Liu et al. · Journal of Chemical Information and Modeling Open access	25 Oct 2022	25
9	The critical role of QM/MM X-ray refinement and accurate tautomer/protomer determination in structure-based drug design Oleg Ya. Borbulevych, Roger I. Martin, Lance M. Westerhoff · Journal of Computer-Aided Molecular Design Open access	27 Oct 2020	25
10	OLEX2– a complete package for molecular crystallography H. Puschmann, Luc J. Bourhis, Oleg V. Dolomanov et al. · Acta Crystallographica Section A Foundations of Crystallography Open access	22 Aug 2011	24
11	XModeScore: a novel method for accurate protonation/tautomer-state determination using quantum-mechanically driven macromolecular X-ray crystallographic refinement Oleg Ya. Borbulevych, Roger I. Martin, Ian J. Tickle et al. · Acta Crystallographica Section D Structural Biology Open access	30 Mar 2016	19
12	Computational alanine scanning with linear scaling semiempirical quantum mechanical methods David Diller, Christine C. Humblet, Xiaohua Zhang et al. · Proteins Structure Function and Bioinformatics Open access	12 Apr 2010	19
13	Quantum Mechanical Pairwise Decomposition Analysis of Protein Kinase B Inhibitors: Validating a New Tool for Guiding Drug Design Xiaohua Zhang, Alan C. Gibbs, Charles H. Reynolds et al. · Journal of Chemical Information and Modeling Open access	5 Mar 2010	18
14	Photoexcited Quantum Dots as Efficacious and Nontoxic Antibiotics in an Animal Model Colleen R. McCollum, Max Levy, John R. Bertram et al. · ACS Biomaterials Science & Engineering	12 Jan 2021	16
15	Light-activated quantum dot potentiation of antibiotics to treat drug-resistant bacterial biofilms Dana F. Stamo, Prashant Nagpal, Anushree Chatterjee · Nanoscale Advances Open access	2021	10
16	Reducing the In-Vitro Electromagnetic Field Effect of Cellular Phones on Human DNA and the Intensity of Their Emitted Radiation M. Syldona · Acupuncture & Electro-Therapeutics Research	Feb 2007	8
17	Targeted learning in observational studies with multi‐valued treatments: An evaluation of antipsychotic drug treatment safety Jason Poulos, Marcela Horvitz‐Lennon, Katya Zelevinsky et al. · Statistics in Medicine Open access	5 Feb 2024	7
18	The Great Deceiver: miR-2392’s Hidden Role in Driving SARS-CoV-2 Infection Jackie McDonald et al. · bioRxiv (Cold Spring Harbor Laboratory) PreprintOpen access	23 Apr 2021	7
19	MovableType Software for Fast Free Energy-Based Virtual Screening: Protocol Development, Deployment, Validation, and Assessment Zheng Zheng, Oleg Ya. Borbulevych, Hao Liu et al. · Journal of Chemical Information and Modeling Open access	13 Aug 2020	7
20	Beyond the front page: In‐text citations to patents as traces of inventor knowledge Cyril Verluise, Gabriele Cristelli, Kyle Higham et al. · Strategic Management Journal Open access	22 Oct 2025	4
21	11th German Conference on Chemoinformatics (GCC 2015) Uli Fechner et al. · Journal of Cheminformatics Open access260 authors	Apr 2016	3
22	Full matrix refinement with the small molecule toolbox Luc J. Bourhis, Oleg V. Dolomanov, Richard J. Gildea et al. · Acta Crystallographica Section A Foundations of Crystallography Open access	22 Aug 2011	3
23	Integration of Ultra-High-Resolution Nano Tracers in Flow Diagnostics with a Multi-Stage Completion Program for Post-Frac Flow Assurance, Fault Evaluation and Well Spacing Optimization in Eagle Ford Shale R. C. B. de Melo, Madhav Manohar, Talgat Shokanov et al. Conference paper	3 Nov 2024	2
24	Incorporation of the quantum chemical packageDivConinto thePHENIXsuite O. Borbulevych, Kenneth M. Merz, Lance M. Westerhoff · Acta Crystallographica Section A Foundations of Crystallography Open access	22 Aug 2011	2
25	Loss of T Cell Antigen Recognition Arising from Changes in Peptide and Major Histocompatibility Complex Protein Flexibility: Implications for Vaccine Design Francis Kobina Insaidoo, Oleg Ya. Borbulevych, Moushumi Hossain et al. · Biophysical Journal Open access	2013	2
26	Experimental Validation of Dequantization of Hybrid Quantum Machine Learning Models Using Classical Surrogates Sparsh Mittal, Mintu Kumar, Yash Chand et al. Conference paper	8 Oct 2025	1
27	Threats Posed by Quantum Computers to State-of-the-Art Encryption Schemes Rajiv Krishnakumar · SSRN Electronic Journal PreprintOpen access	2025	1
28	Fast, Routine Free Energy of Binding Estimation Using MovableType Lance M. Westerhoff, Zheng Zheng · ACS symposium series Conference paper	19 Nov 2021	1
29	Deriving Immune-Modulating Peptides from Viral Serine Protease Inhibitors (Serpins) Jordan R. Yaron, Liqiang Zhang, Michelle Burgin et al. · Methods in molecular biology Book chapter	27 Oct 2020	1
30	Unleashing the Power of Smart Particles for Completion Diagnostics: Advancing the Production Flow Profiling Technology with Sub-Atomic Fingerprints and Big Data Analytics Talgat Shokanov, Pavel Khudorozhkov, Adilkhan K. Shokanov · SPE Annual Technical Conference and Exhibition Conference paper	18 Sep 2019	1
31	Accurate Determination of Tautomeric/Protonation States in Quantum-Mechanic Driven Macromolecular Crystallographic Refinement Oleg Ya. Borbulevych, Lance M. Westerhoff · Biophysical Journal Open access	2015	1
32	Extreme learning machines for attention-based multiple instance learning in whole-slide image classification Rajiv Krishnakumar, Julien Baglio, Frederik F. Flöther et al. · Machine Learning Health Open access	29 Jul 2026	0
33	Regulatory Measures on Goods and Services in the Quantum Computing Industry Yelena Guryanova, Amin Alavi · SSRN Electronic Journal PreprintOpen access	2025	0
34	Introduction Ralph E. Christoffersen · International Journal of Quantum Chemistry Open access	Jul 1979	0
35	Locating H atoms: active-site protomer/tautomer state determination using routine macromolecular X-ray diffraction and BUSTER/DivCon Oleg Ya. Borbulevych, Lance M. Westerhoff · Acta Crystallographica Section A Foundations and Advances Open access	20 Jul 2019	0
36	Fast, accurate X-ray density-driven ligand docking on the free energy surface using the MovableType method coupled with Phenix/DivCon Lance M. Westerhoff, Oleg Ya. Borbulevych, Zheng Zheng et al. · Acta Crystallographica Section A Foundations and Advances Open access	20 Jul 2018	0
37	Modern rigorous macromolecular crystallographic refinement using mixed QM/MM functional methods as implemented in DivCon Oleg Ya. Borbulevych, Lance M. Westerhoff · Acta Crystallographica Section A Foundations and Advances Open access	26 May 2017	0
38	Accurate water site determination in macromolecular refinement using 3D-RSIM Oleg Ya. Borbulevych, Jean‐François Truchon, Paul Labute et al. · Acta Crystallographica Section A Foundations and Advances Open access	5 Aug 2014	0
39	High-performance, quantum mechanics-based macromolecular x-ray refinement Oleg Ya. Borbulevych, Lance M. Westerhoff · Acta Crystallographica Section A Foundations and Advances Open access	5 Aug 2014	0
40	The Impact of Experimental, Protein Structure on our Ability to Model Protein Function Oleg Ya. Borbulevych, Lance M. Westerhoff · Biophysical Journal Open access	Feb 2016	0

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.