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Most cited papers from San Diego State University

What are the most cited papers from San Diego State University?

The most cited paper from San Diego State University is "QIIME allows analysis of high-throughput community sequencing data" (J. Gregory Caporaso et al., 2010), with 36,341 citations. Next come "Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2" (25,165) and "International Physical Activity Questionnaire: 12-Country Reliability and Validity" (22,204).

Showing 50 of 59 papers. Every paper with more than 1,431 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 QIIME allows analysis of high-throughput community sequencing data J. Gregory Caporaso et al. · Nature Methods Open access 11 Apr 2010 36,341
2 Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 Evan K Bolyen et al. · Nature Biotechnology Open access112 authors 24 Jul 2019 25,165
3 International Physical Activity Questionnaire: 12-Country Reliability and Validity Cora L. Craig, Alison L. Marshall, MICHAEL SJ??STR??M et al. · Medicine & Science in Sports & Exercise Aug 2003 22,204
4 Structure, function and diversity of the healthy human microbiome Curtis Huttenhower et al. · Nature Open access248 authors Jun 2012 12,195
5 On the use of windows for harmonic analysis with the discrete Fourier transform Fred J. Harris · Proceedings of the IEEE 1978 7,317
6 Physical Activity and Public Health William L. Haskell, I‐Min Lee, Russell R. Pate et al. · Circulation Open access Aug 2007 6,569
7 Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Daniel J. Klionsky et al. · Autophagy Open access2,467 authors 2 Jan 2016 6,023
8 Quality control and preprocessing of metagenomic datasets Robert Schmieder, Robert Alan Edwards · Bioinformatics Open access 28 Jan 2011 5,477
9 THE SEVENTH DATA RELEASE OF THE SLOAN DIGITAL SKY SURVEY Kevork N. Abazajian et al. · The Astrophysical Journal Supplement Series Open access204 authors 18 May 2009 5,449
10 Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking Mingxun Wang et al. · Nature Biotechnology Open access127 authors Aug 2016 4,812
11 The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) Ross Overbeek, Robert Olson, Gordon D. Pusch et al. · Nucleic Acids Research Open access 29 Nov 2013 4,729
12 A review of correlates of physical activity of children and adolescents James F. Sallis, Judith J. Prochaska, Wendell C. Taylor · Medicine & Science in Sports & Exercise May 2000 4,439
13 Neural network ensembles Lars Kai Hansen, Peter B. Salamon · IEEE Transactions on Pattern Analysis and Machine Intelligence Open access 1990 4,300
14 Kepler Planet-Detection Mission: Introduction and First Results William J. Borucki et al. · Science 7 Jan 2010 4,121
15 The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Folker Meyer, Daniel Paarmann, M. D'Souza et al. · BMC Bioinformatics Open access 19 Sep 2008 3,674
16 Psychometric analysis and refinement of the connor–davidson resilience scale (CD‐RISC): Validation of a 10‐item measure of resilience Laura Campbell‐Sills, Murray B. Stein · Journal of Traumatic Stress Dec 2007 3,582
17 AN ECOLOGICAL APPROACH TO CREATING ACTIVE LIVING COMMUNITIES James F. Sallis, Robert Cervero, William L. Ascher et al. · Annual Review of Public Health Review 30 Sep 2005 3,365
18 Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin Atsushi Miyawaki, Juan Llopis, Roger Heim et al. · Nature 28 Aug 1997 3,272
19 Environmental monitoring and assessment Elena Aguilar, Daniel Sousa, Amy V. Uhrin et al. Book chapterOpen access 5 Sep 2011 3,156
20 Correlates of adults??? participation in physical activity: review and update Stewart Graeme Trost, Neville G. Owen, Adrian Ernest Bauman et al. · Medicine & Science in Sports & Exercise Dec 2002 3,080
21 Re‐examining the components of transformational and transactional leadership using the Multifactor Leadership Bruce J. Avolio, Bernard M. Bass, Dong I. Jung · Journal of Occupational and Organizational Psychology Dec 1999 3,027
22 Predicting unit performance by assessing transformational and transactional leadership. Bernard M. Bass, Bruce J. Avolio, Dong I. Jung et al. · Journal of Applied Psychology 2003 3,023
23 A communal catalogue reveals Earth’s multiscale microbial diversity Luke Thompson et al. · Nature Open access303 authors 30 Oct 2017 2,968
24 The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism Adriana Di Martino et al. · Molecular Psychiatry Open access 18 Jun 2013 2,929
25 Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities Catherine Lozupone, Micah Hamady, Scott Theodore Kelley et al. · Applied and Environmental Microbiology Open access 12 Jan 2007 2,817
26 A framework for human microbiome research Barbara A. Methé et al. · Nature Open access248 authors Jun 2012 2,794
27 Geographical Detectors‐Based Health Risk Assessment and its Application in the Neural Tube Defects Study of the Heshun Region, China Jinfeng Wang, Xin‐Hu Li, George Christakos et al. · International Journal of Geographical Information Systems 2010 2,766
28 Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2017 Christina Fitzmaurice et al. · JAMA Oncology Open access628 authors 27 Sep 2019 2,699
29 Ecological models of health behavior. James F. Sallis, Neville G. Owen, Edwin B. Fisher · Swinburne figshare (Swinburne University of Technology) 2008 2,697
30 Biological Feedbacks in Global Desertification William H. Schlesinger, James F. Reynolds, Gary L. Cunningham et al. · Science 2 Mar 1990 2,542
31 Energy balance closure at FLUXNET sites Kell Wilson et al. · Agricultural and Forest Meteorology 28 Oct 2002 2,424
32 Environmental correlates of walking and cycling: Findings from the transportation, urban design, and planning literatures Brian E. Saelens, James F. Sallis, Lawrence Douglas Frank · Annals of Behavioral Medicine Apr 2003 2,330
33 Physical Activity and Public Health in Older Adults Miriam E. Nelson, W. Jack Rejeski, Steven N. Blair et al. · Medicine & Science in Sports & Exercise Aug 2007 2,111
34 Inclusion and Diversity in Work Groups: A Review and Model for Future Research Lynn M. Shore, Amy E. Randel, Beth G. Chung et al. · Journal of Management 28 Oct 2010 2,093
35 Ingested plastic transfers hazardous chemicals to fish and induces hepatic stress Chelsea M. Rochman, Eunha Hoh, Tomofumi Kurobe et al. · Scientific Reports Open access 21 Nov 2013 2,021
36 Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes Daniel J. Klionsky et al. · CINECA IRIS Institutial research information system (University of Pisa) 236 authors 2008 1,998
37 Bayesian community-wide culture-independent microbial source tracking Dan Knights, Justin Kuczynski, Emily S. Charlson et al. · Nature Methods Open access 17 Jul 2011 1,994
38 Observational Evidence of Recent Change in the Northern High-Latitude Environment Mark C. Serreze, John Evangelist Walsh, F. Stuart Chapin et al. · Climatic Change Jul 2000 1,974
39 The Role of Attitude toward the Ad as a Mediator of Advertising Effectiveness: A Test of Competing Explanations SCOTT B. MACKENZIE, Richard J. Lutz, George E. Belch · Journal of Marketing Research May 1986 1,963
40 Organizational Climate and Culture Benjamin Schneider, Mark G. Ehrhart, William H. Macey · Annual Review of Psychology Review 2 Aug 2012 1,954
41 A Core System for the Implementation of Task Sets Nico U.F. Dosenbach, Kristina Visscher, Erica D. Palmer et al. · Neuron Open access Jun 2006 1,868
42 Teachers’ Beliefs and Conceptions: A Synthesis of the Research Alba Gonzalez Thompson Book chapter 16 Nov 2006 1,866
43 Golden Gulag: Prisons, Surplus, Crisis, and Opposition in Globalizing California Alan Mobley · Contemporary Sociology A Journal of Reviews Mar 2008 1,859
44 Dose-response associations between accelerometry measured physical activity and sedentary time and all cause mortality: systematic review and harmonised meta-analysis Ulf Ekelund, Jakob Tarp, Jostein Steene‐Johannessen et al. · BMJ ReviewOpen access 21 Aug 2019 1,801
45 Classify plastic waste as hazardous Chelsea M. Rochman, Mark A. Oakley Browne, Benjamin S. Halpern et al. · Nature 12 Feb 2013 1,762
46 Increases in Depressive Symptoms, Suicide-Related Outcomes, and Suicide Rates Among U.S. Adolescents After 2010 and Links to Increased New Media Screen Time Jean M. Twenge, Thomas E. Joiner, Megan L. Rogers et al. · Clinical Psychological Science 14 Nov 2017 1,725
47 Generational Differences in Work Values: Leisure and Extrinsic Values Increasing, Social and Intrinsic Values Decreasing Jean M. Twenge, Stacy McIlraith Campbell, Brian James Hoffman et al. · Journal of Management Mar 2010 1,630
48 The role of transformational leadership in enhancing organizational innovation: Hypotheses and some preliminary findings Dong I. Jung, Chee W. Chow, Anne Wu · The Leadership Quarterly Aug 2003 1,627
49 The development of scales to measure social support for diet and exercise behaviors James F. Sallis, Robin M. Grossman, Robin B. Pinski et al. · Preventive Medicine Nov 1987 1,566
50 Linking objectively measured physical activity with objectively measured urban form Lawrence Douglas Frank, Thomas L. Schmid, James F. Sallis et al. · American Journal of Preventive Medicine Open access Feb 2005 1,560

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.