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Most cited papers from Santa Fe Institute

What are the most cited papers from Santa Fe Institute?

The most cited paper from Santa Fe Institute is "The Structure and Function of Complex Networks" (Michael E. Newman, 2003), with 18,932 citations. Next come "Community structure in social and biological networks" (15,819) and "No free lunch theorems for optimization" (14,318).

Showing 50 of 60 papers. Every paper with more than 1,275 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 The Structure and Function of Complex Networks Michael E. Newman · SIAM Review Open access 2003 18,932
2 Community structure in social and biological networks Michelle Girvan, Mark E. J. Newman · Proceedings of the National Academy of Sciences Open access 11 Jun 2002 15,819
3 No free lunch theorems for optimization David H. Wolpert, William G. Macready · IEEE Transactions on Evolutionary Computation Apr 1997 14,318
4 Finding and evaluating community structure in networks Michelle Gayle Newman, Michelle Girvan · Physical Review E Open access 26 Feb 2004 14,307
5 TOWARD A METABOLIC THEORY OF ECOLOGY James H. Brown, James F. Gillooly, Andrew P. Allen et al. · Ecology Jul 2004 7,970
6 MITOS: Improved de novo metazoan mitochondrial genome annotation Matthias Bernt, Alexander Donath, Frank Jühling et al. · Molecular Phylogenetics and Evolution 6 Sep 2012 5,583
7 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Ewan Birney et al. · Nature Open access312 authors Jun 2007 5,310
8 Assortative Mixing in Networks Mark E. J. Newman · Physical Review Letters Open access 28 Oct 2002 5,121
9 A General Model for the Origin of Allometric Scaling Laws in Biology Geoffrey B. West, James H. Brown, Brian Joseph Enquist · Science 4 Apr 1997 5,083
10 Maps of random walks on complex networks reveal community structure Martin Rosvall, Carl T. Bergstrom · Proceedings of the National Academy of Sciences Open access 23 Jan 2008 4,772
11 The structure of scientific collaboration networks Mark E. J. Newman · Proceedings of the National Academy of Sciences Open access 9 Jan 2001 4,550
12 Effects of Size and Temperature on Metabolic Rate James F. Gillooly, James H. Brown, Geoffrey B. West et al. · Science 21 Sep 2001 3,887
13 Testing for nonlinearity in time series: the method of surrogate data James P. Theiler, Stephen Eubank, André Longtin et al. · Physica D Nonlinear Phenomena Sep 1992 3,820
14 Random graphs with arbitrary degree distributions and their applications Mark E. J. Newman, Steven H. Strogatz, Duncan J. Watts · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics Open access 24 Jul 2001 3,743
15 Spread of epidemic disease on networks Mark E. J. Newman · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics Open access 26 Jul 2002 3,323
16 Mixing patterns in networks Mark E. J. Newman · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics Open access 27 Feb 2003 3,188
17 Growth, innovation, scaling, and the pace of life in cities Luís M. A. Bettencourt, José Lobo, Dirk Helbing et al. · Proceedings of the National Academy of Sciences Open access 16 Apr 2007 2,733
18 Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality Mark E. J. Newman · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics Open access 28 Jun 2001 2,664
19 Analysis of weighted networks Mark E. J. Newman · Physical Review E Open access 24 Nov 2004 2,536
20 Network Robustness and Fragility: Percolation on Random Graphs Duncan S. Callaway, Mark E. J. Newman, Steven H. Strogatz et al. · Physical Review Letters Open access 18 Dec 2000 2,517
21 Net-zero emissions energy systems Steven J. Davis et al. · Science Open access 28 Jun 2018 2,396
22 Fast folding and comparison of RNA secondary structures Ivo L. Hofacker, Walter Fontana, Peter Florian Stadler et al. · Monatshefte für Chemie - Chemical Monthly Feb 1994 2,364
23 A Significant Upward Shift in Plant Species Optimum Elevation During the 20th Century Jonathan Lenoir, Jean‐Claude Gégout, Pablo A. Marquet et al. · Science Open access 26 Jun 2008 2,325
24 Anticipating Critical Transitions Marten Scheffer, Stephen R. Carpenter, Timothy M. Lenton et al. · Science Open access 18 Oct 2012 2,275
25 Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations Brian J. O’Roak et al. · Nature Open access 3 Apr 2012 2,249
26 Experimental Study of Inequality and Unpredictability in an Artificial Cultural Market Matthew Salganik, Peter Sheridan Dodds, Duncan J. Watts · Science 9 Feb 2006 2,230
27 Hierarchical structure and the prediction of missing links in networks Aaron J. Clauset, Cristopher Moore, Mark E. J. Newman · Nature Open access 30 Apr 2008 2,213
28 Clustering and preferential attachment in growing networks Mark E. J. Newman · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics Open access 26 Jul 2001 2,127
29 Scientific collaboration networks. I. Network construction and fundamental results Mark E. J. Newman · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics 28 Jun 2001 2,116
30 Embedology TIMOTHY D. SAUER, James A. Yorke, Martin Casdagli · Journal of Statistical Physics Nov 1991 2,046
31 Approaching a state shift in Earth’s biosphere Anthony D. Barnosky et al. · Nature Open access Jun 2012 1,978
32 Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection Brandon F. Keele et al. · Proceedings of the National Academy of Sciences Open access 19 May 2008 1,967
33 “Economic man” in cross-cultural perspective: Behavioral experiments in 15 small-scale societies Joseph Henrich, Robert T. Boyd, Samuel Bowles et al. · Behavioral and Brain Sciences Dec 2005 1,943
34 The Knowledge Economy Walter W. Powell, Kaisa Snellman · Annual Review of Sociology Review 13 Jul 2004 1,929
35 Inferring friendship network structure by using mobile phone data Nathan Eagle, Alex Pentland, David M. J. Lazer · Proceedings of the National Academy of Sciences Open access 17 Aug 2009 1,892
36 Network structure and biodiversity loss in food webs: robustness increases with connectance Jennifer A. Dunne, Richard J. Williams, Neo D. Martinez · Ecology Letters Jul 2002 1,847
37 The return of the variance: intraspecific variability in community ecology Cyrille Violle, Brian Joseph Enquist, Brian J. McGill et al. · Trends in Ecology & Evolution Review 14 Jan 2012 1,798
38 The evolution of altruistic punishment Robert T. Boyd, Herbert M. Gintis, Samuel Bowles et al. · Proceedings of the National Academy of Sciences Open access 11 Mar 2003 1,778
39 Empirical Analysis of an Evolving Social Network Gueorgi Kossinets, Duncan J. Watts · Science 5 Jan 2006 1,752
40 The Fourth Dimension of Life: Fractal Geometry and Allometric Scaling of Organisms Geoffrey B. West, James H. Brown, Brian Joseph Enquist · Science 4 Jun 1999 1,751
41 The Lack of A Priori Distinctions Between Learning Algorithms David H. Wolpert · Neural Computation Oct 1996 1,688
42 Networks, Dynamics, and the Small‐World Phenomenon Duncan J. Watts · American Journal of Sociology Sep 1999 1,556
43 Food-web structure and network theory: The role of connectance and size Jennifer A. Dunne, Richard J. Williams, Neo D. Martinez · Proceedings of the National Academy of Sciences Open access 16 Sep 2002 1,553
44 Ecological networks and their fragility José M. Montoya, Stuart L. Pimm, Ricard V. Solé · Nature Jul 2006 1,526
45 The Origins of Scaling in Cities Luís M. A. Bettencourt · Science 20 Jun 2013 1,515
46 Ranking the effectiveness of worldwide COVID-19 government interventions Nils Haug, Lukas Geyrhofer, Alessandro Londei et al. · Nature Human Behaviour Open access 16 Nov 2020 1,481
47 A general model for the structure and allometry of plant vascular systems Geoffrey B. West, James H. Brown, Brian Joseph Enquist · Nature Aug 1999 1,472
48 Renormalization group analysis of the small-world network model Mark E. J. Newman, Duncan J. Watts · Physics Letters A Open access Dec 1999 1,469
49 Life-history trade-offs favour the evolution of animal personalities Max Wolf, G. Sander van Doorn, Olof Leimar et al. · Nature May 2007 1,455
50 A Cooperative Species: Human Reciprocity and Its Evolution Samuel Bowles, Herbert M. Gintis · Economics Books 31 May 2011 1,452

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.