Institution · Scripps Research Institute
Most cited papers from Scripps Research Institute
What are the most cited papers from Scripps Research Institute?
The most cited paper from Scripps Research Institute is "AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading" (Oleg Trott, Arthur J. Olson, 2009), with 38,730 citations. Next come "AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility" (25,864) and "Development and testing of a general amber force field" (20,214).
Showing 50 of 59 papers. Every paper with more than 2,599 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading Oleg Trott, Arthur J. Olson · Journal of Computational Chemistry | 4 Jun 2009 | 38,730 |
| 2 | AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility Garrett M. Morris, Ruth Huey, William Lindstrom et al. · Journal of Computational Chemistry | 27 Apr 2009 | 25,864 |
| 3 | Development and testing of a general amber force field Junmei Wang, Romain M. Wolf, James W. Caldwell et al. · Journal of Computational Chemistry | 13 Apr 2004 | 20,214 |
| 4 | Click Chemistry: Diverse Chemical Function from a Few Good Reactions Hartmuth Christian Kolb, M. G. Finn, Karl Barry Sharpless · Angewandte Chemie International Edition | Jun 2001 | 13,223 |
| 5 | Bioconductor: open software development for computational biology and bioinformatics Robert C. Gentleman et al. · Genome biology | 15 Sep 2004 | 12,632 |
| 6 | A Stepwise Huisgen Cycloaddition Process: Copper(I)-Catalyzed Regioselective “Ligation” of Azides and Terminal Alkynes Vsevolod V. Rostovtsev, Luke G. Green, Valery V. Fokin et al. · Angewandte Chemie International Edition | 15 Jul 2002 | 11,614 |
| 7 | Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines Clotilde Théry et al. · Journal of Extracellular Vesicles | 23 Nov 2018 | 11,535 |
| 8 | Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function Garrett M. Morris, David S. Goodsell, Robert S. Halliday et al. · Journal of Computational Chemistry | 15 Nov 1998 | 10,945 |
| 9 | High-performance medicine: the convergence of human and artificial intelligence Eric J. Topol · Nature Medicine | 28 Dec 2018 | 10,125 |
| 10 | The Amber biomolecular simulation programs David Andrew Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry | 30 Sep 2005 | 9,778 |
| 11 | Updating P300: An integrative theory of P3a and P3b John M Polich · Clinical Neurophysiology | 19 Jun 2007 | 8,109 |
| 12 | Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018 Lorenzo Galluzzi et al. · Cell Death and Differentiation | 23 Jan 2018 | 6,760 |
| 13 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Daniel J. Klionsky et al. · Autophagy | 2 Jan 2016 | 6,023 |
| 14 | Automatic atom type and bond type perception in molecular mechanical calculations Junmei Wang, Wei Wang, Peter A. Kollman et al. · Journal of Molecular Graphics and Modelling | 4 Feb 2006 | 5,755 |
| 15 | The proximal origin of SARS-CoV-2 Kristian G. Andersen, Andrew Rambaut, Walter Ian Lipkin et al. · Nature Medicine | 17 Mar 2020 | 5,518 |
| 16 | XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification Colin A. Smith, Elizabeth J. Want, Grace O’Maille et al. · Analytical Chemistry | 7 Jan 2006 | 5,419 |
| 17 | Neurocircuitry of Addiction George F. Koob, Nora D. Volkow · Neuropsychopharmacology | 26 Aug 2009 | 5,334 |
| 18 | Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models Peter A. Kollman, Irina Massova, Carolina Reyes et al. · Accounts of Chemical Research | 4 Oct 2000 | 5,049 |
| 19 | Cell Migration: Integrating Signals from Front to Back Anne J. Ridley, Martin Alexander Schwartz, Keith Burridge et al. · Science | 4 Dec 2003 | 5,046 |
| 20 | Large-scale analysis of the yeast proteome by multidimensional protein identification technology Michael P. Washburn, Dirk Andreas Wolters, John R. Yates · Nature Biotechnology | Mar 2001 | 4,806 |
| 21 | A second generation human haplotype map of over 3.1 million SNPs Sarah Shaw Murray et al. · Nature | Oct 2007 | 4,615 |
| 22 | Long COVID: major findings, mechanisms and recommendations Hannah Davis, Lisa McCorkell, Julia Moore Vogel et al. · Nature Reviews Microbiology | 13 Jan 2023 | 4,321 |
| 23 | Synthesis of Proteins by Native Chemical Ligation Philip E. Dawson, Tom W. Muir, Ian Clark‐Lewis et al. · Science | 4 Nov 1994 | 4,169 |
| 24 | Palladium(II)‐Catalyzed CH Activation/CC Cross‐Coupling Reactions: Versatility and Practicality Xiao Chen, Keary M. Engle, Dong‐Hui Wang et al. · Angewandte Chemie International Edition | 25 Jun 2009 | 4,122 |
| 25 | Small-Molecule Library Screening by Docking with PyRx Sargis Dallakyan, Arthur J. Olson · Methods in molecular biology | 22 Dec 2014 | 4,074 |
| 26 | Intrinsically unstructured proteins and their functions H. Jane Dyson, Peter E. Wright · Nature Reviews Molecular Cell Biology | Mar 2005 | 3,939 |
| 27 | The hypocretins: Hypothalamus-specific peptides with neuroexcitatory activity Luı́s de Lecea, Thomas S. Kilduff, Christelle Peyron et al. · Proceedings of the National Academy of Sciences | 6 Jan 1998 | 3,912 |
| 28 | Synthetic Organic Electrochemical Methods Since 2000: On the Verge of a Renaissance Ming Yan, Yu Kawamata, Phil S. Baran · Chemical Reviews | 9 Oct 2017 | 3,895 |
| 29 | ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering Thomas Gaj, Charles A. Gersbach, Carlos F. Barbas · Trends in biotechnology | 8 May 2013 | 3,844 |
| 30 | Regulated portals of entry into the cell S. D. Conner, Sandra L. Schmid · Nature | Mar 2003 | 3,821 |
| 31 | The Transcriptional Landscape of the Mammalian Genome Piero Carninci et al. · Science | Sep 2005 | 3,617 |
| 32 | A gene atlas of the mouse and human protein-encoding transcriptomes Andrew I. Su, Tim Wiltshire, Serge Batalov et al. · Proceedings of the National Academy of Sciences | 9 Apr 2004 | 3,558 |
| 33 | Neurons Containing Hypocretin (Orexin) Project to Multiple Neuronal Systems Christelle Peyron, Devin K. Tighe, Anthony N. van den Pol et al. · Journal of Neuroscience | Dec 1998 | 3,495 |
| 34 | Extending the treatment of backbone energetics in protein force fields: Limitations of gas‐phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations Alexander D. MacKerell, Michael Feig, Charles L. Brooks · Journal of Computational Chemistry | 2 Jun 2004 | 3,416 |
| 35 | Piezo1 and Piezo2 Are Essential Components of Distinct Mechanically Activated Cation Channels Bertrand Coste, Jayanti Mathur, Manuela Schmidt et al. · Science | 2 Sep 2010 | 3,398 |
| 36 | High-Resolution Crystal Structure of an Engineered Human β 2 -Adrenergic G Protein–Coupled Receptor Vadim Cherezov, Daniel M. Rosenbaum, Michael A. Hanson et al. · Science | 25 Oct 2007 | 3,296 |
| 37 | Mechanisms of SARS-CoV-2 entry into cells Cody B. Jackson, Michael Reynolds Farzan, Bing Chen et al. · Nature Reviews Molecular Cell Biology | 5 Oct 2021 | 3,285 |
| 38 | AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules David A. Pearlman, David Andrew Case, James W. Caldwell et al. · Computer Physics Communications | Sep 1995 | 3,156 |
| 39 | The growing impact of click chemistry on drug discovery Hartmuth Christian Kolb, Karl Barry Sharpless · Drug Discovery Today | Dec 2003 | 3,149 |
| 40 | Python: a programming language for software integration and development. M F Sanner · PubMed | Feb 1999 | 3,121 |
| 41 | Toll-like receptors in the induction of the innate immune response Alan A. Aderem, Richard J. Ulevitch · Nature | 17 Aug 2000 | 3,098 |
| 42 | Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm Peter E. Wright, H. Jane Dyson · Journal of Molecular Biology | Oct 1999 | 3,035 |
| 43 | Requirement of Vascular Integrin α v β 3 for Angiogenesis Peter C. Brooks, Richard A.F. Clark, David A. Cheresh · Science | 22 Apr 1994 | 3,025 |
| 44 | Drug Addiction, Dysregulation of Reward, and Allostasis G F Koob · Neuropsychopharmacology | Feb 2001 | 2,979 |
| 45 | AI in health and medicine Pranav Rajpurkar, Emma Chen, Oishi Banerjee et al. · Nature Medicine | 2022 | 2,914 |
| 46 | Metabolomics: beyond biomarkers and towards mechanisms Caroline Helen Johnson, Julijana Ivanišević, Gary E. Siuzdak · Nature Reviews Molecular Cell Biology | 16 Mar 2016 | 2,894 |
| 47 | Computational protein–ligand docking and virtual drug screening with the AutoDock suite Stefano Forli, Ruth Huey, Michael E. Pique et al. · Nature Protocols | 14 Apr 2016 | 2,879 |
| 48 | Proline-Catalyzed Direct Asymmetric Aldol Reactions Benjamin List, Richard Alan Lerner, Carlos F. Barbas · Journal of the American Chemical Society | 26 Feb 2000 | 2,868 |
| 49 | Solvent-Accessible Surfaces of Proteins and Nucleic Acids Michael L. Connolly · Science | 19 Aug 1983 | 2,761 |
| 50 | Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 Daniel J. Klionsky et al. · Autophagy | 2 Jan 2021 | 2,743 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.