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Institution · SimBiotic Software (United States)

Most cited papers from SimBiotic Software (United States)

SimBiotic Software (United States)

What are the most cited papers from SimBiotic Software (United States)?

The most cited paper from SimBiotic Software (United States) is "Does conservation planning matter in a dynamic and uncertain world?" (Eli Meir, Sandy J. Andelman, Hugh P. Possingham, 2004), with 454 citations. Next come "Bacillus megaterium Rhizobacteria Promote Growth and Alter Root-System Architecture Through an Auxin- and Ethylene-Independent Signaling Mechanism in Arabidopsis thaliana" (326) and "Time to Evolve? Potential Evolutionary Responses of Fraser River Sockeye Salmon to Climate Change and Effects on Persistence" (176).

Showing 50 of 78 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#Paper
1 Does conservation planning matter in a dynamic and uncertain world? Eli Meir, Sandy J. Andelman, Hugh P. Possingham · Ecology Letters 15 Jul 2004 454
2 Bacillus megaterium Rhizobacteria Promote Growth and Alter Root-System Architecture Through an Auxin- and Ethylene-Independent Signaling Mechanism in Arabidopsis thaliana José López‐Bucio, Juan Carlos Campos-Cuevas, Erasto Hernández‐Calderón et al. · Molecular Plant-Microbe Interactions Feb 2007 326
3 Time to Evolve? Potential Evolutionary Responses of Fraser River Sockeye Salmon to Climate Change and Effects on Persistence Thomas Eric Reed, Daniel E. Schindler, Merran J. Hague et al. · PLoS ONE Open access 28 Jun 2011 176
4 College Students' Misconceptions About Evolutionary Trees Eli Meir, Judy Perry, Jon C. Herron et al. · The American Biology Teacher Sep 2007 164
5 Electron Microprobe and Synchrotron X-ray Fluorescence Mapping of the Heterogeneous Distribution of Copper in High-Copper Vineyard Soils Astrid R. Jacobson, Sylvie Dousset, Francis G. Andreux et al. · Environmental Science & Technology 17 Aug 2007 86
6 Addressing Undergraduate Student Misconceptions about Natural Selection with an Interactive Simulated Laboratory Joel K. Abraham, Eli Meir, Judy Perry et al. · Evolution Education and Outreach Open access 9 Jul 2009 67
7 Unintended Consequences of Urbanization for Aquatic Ecosystems: A Case Study from the Arizona Desert W. John Roach, James Brendan Heffernan, Nancy B. Grimm et al. · BioScience Open access Sep 2008 60
8 Evaluating Two Approaches to Helping College Students Understand Evolutionary Trees through Diagramming Tasks Judy Perry, Eli Meir, Jon C. Herron et al. · CBE—Life Sciences Education Open access Jun 2008 49
9 Long-term fire management history affects N-fertilization sensitivity, but not seasonality, of grassland soil microbial communities Christine M. Carson, Lydia H. Zeglin · Soil Biology and Biochemistry 27 Mar 2018 45
10 Multiple Circulating Infections Can Mimic the Early Stages of Viral Hemorrhagic Fevers and Possible Human Exposure to Filoviruses in Sierra Leone Prior to the 2014 Outbreak Matthew L. Boisen et al. · Viral Immunology Open access 22 Dec 2014 44
11 Transparent soil microcosms allow 3D spatial quantification of soil microbiological processesin vivo Helen F. Downie, Tracy A. Valentine, Wilfred Otten et al. · Plant Signaling & Behavior Open access 3 Oct 2014 43
12 Short Lesson Plan Associated with Increased Acceptance of Evolutionary Theory and Potential Change in Three Alternate Conceptions of Macroevolution in Undergraduate Students Joel K. Abraham, Kathryn E. Perez, Nicholas Downey et al. · CBE—Life Sciences Education Open access Jun 2012 38
13 Generative adversarial networks accurately reconstruct pan-cancer histology from pathologic, genomic, and radiographic latent features Frederick Matthew Howard, Hanna M. Hieromnimon, Siddhi Ramesh et al. · Science Advances Open access 15 Nov 2024 31
14 Soil fungal community changes in response to long-term fire cessation and N fertilization in tallgrass prairie Christine M. Carson, Ari Jumpponen, John M. Blair et al. · Fungal ecology 15 May 2019 30
15 LASSO—ligand activity by surface similarity order: a new tool for ligand based virtual screening Darryl Reid, Bashir S. Sadjad, Zsolt Zsoldos et al. · Journal of Computer-Aided Molecular Design 17 Jan 2008 29
16 Automated Writing Assessments Measure Undergraduate Learning after Completion of a Computer-Based Cellular Respiration Tutorial Juli D. Uhl, Kamali N. Sripathi, Eli Meir et al. · CBE—Life Sciences Education Open access 8 Jun 2021 22
17 Observing populations and testing predictions about genetic drift in a computer simulation improves college students’ conceptual understanding Rebecca Price, Denise S. Pope, Joel K. Abraham et al. · Evolution Education and Outreach Open access 22 Jul 2016 22
18 Testing the effectiveness of two natural selection simulations in the context of a large-enrollment undergraduate laboratory class Denise S. Pope, Caleb M. Rounds, Jody Clarke‐Midura · Evolution Education and Outreach Open access 14 Jul 2017 21
19 ATPase activities of root microsomes from mycorrhizal sunflower (Helianthus annuus) and onion (Allium cepd) plants Alberto Bago, Juan Pedro Donaire, Concepción Azcón‐Aguilar · New Phytologist Jun 1997 20
20 Are intermediate constraint question formats useful for evaluating student thinking and promoting learning in formative assessments? Eli Meir, Daniel Wendel, Denise S. Pope et al. · Computers & Education Open access 17 Jun 2019 18
21 Novel computational biology modeling system can accurately forecast response to neoadjuvant therapy in early breast cancer Joseph Richard Peterson, John A. Cole, John R. Pfeiffer et al. · Breast Cancer Research Open access 10 May 2023 17
22 Imaging the Landmarks of Vascular Recovery Jamila Hedhli, Min-Woo Kim, Hailey J. Knox et al. · Theranostics Open access 2020 17
23 Highly accurate response prediction in high-risk early breast cancer patients using a biophysical simulation platform Frederick Matthew Howard, Gong He, Joseph Richard Peterson et al. · Breast Cancer Research and Treatment Open access 5 Sep 2022 16
24 Biology Undergraduate Students’ Graphing Practice in Digital Versus Pen and Paper Graphing Environments Stephanie M. Gardner, Elizabeth Suazo‐Flores, Susan L. Maruca et al. · Journal of Science Education and Technology Open access 12 Jan 2021 15
25 WordBytes: Exploring an Intermediate Constraint Format for Rapid Classification of Student Answers on Constructed Response Assessments Kerry J. Kim, Denise S. Pope, Daniel Wendel et al. · Zenodo (CERN European Organization for Nuclear Research) Open access 23 Dec 2017 14
26 A new assessment to monitor student performance in introductory neurophysiology: Electrochemical Gradients Assessment Device Jack A. Cerchiara, Kerry J. Kim, Eli Meir et al. · AJP Advances in Physiology Education Open access 15 May 2019 13
27 Iterative design of a simulation-based module for teaching evolution by natural selection Jody Clarke‐Midura, Denise S. Pope, Susan L. Maruca et al. · Evolution Education and Outreach Open access 26 Apr 2018 12
28 Nutrient Variation in an Urban Lake Chain and its Consequences for Phytoplankton Production W. John Roach, Nancy B. Grimm · Journal of Environmental Quality 22 May 2009 12
29 Product-inhibition feedbacks, not microbial population level tradeoffs or soil pH, regulate decomposition potential under nutrient eutrophication Matthew A. Nieland, Christine M. Carson, Victoria Floyd et al. · Soil Biology and Biochemistry Open access 16 Nov 2023 11
30 Seeing beyond cancer: multi-institutional validation of object localization and 3D semantic segmentation using deep learning for breast MRI Arda Pekis, Vignesh Kannan, Evandros Kaklamanos et al. Conference paper 2 Apr 2024 8
31 Designing Activities to Teach Higher-Order Skills: How Feedback and Constraint Affect Learning of Experimental Design Eli Meir, Denise S. Pope, Joel K. Abraham et al. · CBE—Life Sciences Education Open access 12 Dec 2023 8
32 Performance of an AI-powered visualization software platform for precision surgery in breast cancer patients Michelle Weitz, John R. Pfeiffer, Snehal Patel et al. · npj Breast Cancer Open access 14 Nov 2024 7
33 Designing a Simulation Lab: The Process that Led to Action Potentials Explored and Extended, Two Simulation-Based Neurobiology Labs Eli Meir · Journal of Undergraduate Neuroscience Education Open access Oct 2022 7
34 Next generation immuno-oncology tumor profiling using a rapid, non-invasive, computational biophysics biomarker in early-stage breast cancer Daniel E. Cook, Matthew Biancalana, Nicole Liadis et al. · Frontiers in Artificial Intelligence Open access 17 Apr 2023 6
35 Efficacy of TurmiZn, a Metallic Complex of Curcuminoids-Tetrahydrocurcumin and Zinc on Bioavailability, Antioxidant, and Cytokine Modulation Capability Dan DuBourdieu, Jamil Talukder, Ajay Kumar Srivastava et al. · Molecules Open access 9 Feb 2023 6
36 Diversity and violence during conflict migration: The Troubles in Northern Ireland Claire L. Adida, Joseph M. Brown, Gordon Carlos McCord et al. · Political Science Research and Methods Open access 26 Sep 2022 5
37 Pan-Cancer, Genome-Scale Metabolic Network Analysis of over 10,000 Patients Elucidates Relationship between Metabolism and Survival Jesse E. Bucksot, Katherine Ritchie, Matthew Biancalana et al. · Cancers Open access 22 Jun 2024 4
38 Facing the challenges of peripheral arterial disease in the era of emerging technologies Jamila Hedhli, John A. Cole, Waqas Memon et al. · JVS-Vascular Insights Open access 2024 4
39 Strategies for Targeting the Learning of Complex Skills Like Experimentation to Different Student Levels: The Intermediate Constraint Hypothesis Eli Meir · Contributions from biology education research Book chapter 2022 4
40 Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format Arnab Mutsuddy, Cemal Erdem, Jonah R. Huggins et al. · Bioinformatics Advances Open access 2023 3
41 Study of chicken liver and spleen by Mössbauer spectroscopy Michael I. Oshtrakh, Oleg B. Milder, Vladimir A. Semionkin et al. · Hyperfine Interactions Sep 2005 3
42 The graph construction competency model for biology (GCCM-Bio): A framework for instruction and assessment of graph construction Joel K. Abraham, Elizabeth Suazo‐Flores, Anupriya Karippadath et al. · BioScience Open access 20 Jun 2025 2
43 Building a Performance-Based Assessment of Graph Construction Using Evidence-Centered Design Eli Meir, Stephanie M. Gardner, Susan L. Maruca et al. Book chapter 2023 2
44 Elucidating the Mechanisms of Dynamic and Robust Control of the Liver Homeostatic Renewal Process: Cell Network Modeling and Analysis Daniel Cook, Alexandra Manchel, Babatunde A. Ogunnaike et al. · Industrial & Engineering Chemistry Research Open access 27 Jan 2023 2
45 Exposure to Discretionary Arrests Increases Support for Anti-Police Protests Ted Hsuan Yun Chen, Paul McLachlan, Christopher J. Fariss PreprintOpen access 10 Oct 2021 2
46 Regional Intellectual Wealth and Sustainable Development in Colombia Paula Garcia Benitez, Carlos Hildebrando Fonseca Zárate, Juan Carlos García Ubaque · Tecnura Open access Apr 2021 2
47 Alternatively Spliced Dual-Coding Regions Contribute to the Human Gene Regulatory Program Clément Goubert, Alexander J Nord, Kaitlin Sawyer et al. · bioRxiv (Cold Spring Harbor Laboratory) PreprintOpen access 25 Feb 2026 1
48 A rhinovirus vaccine evokes T cell mediated cross-reactive immunity in a preclinical model of rhinovirus infection Stephen M Shaw, Chloe Julia Pyle, Neeta D Patel et al. · bioRxiv (Cold Spring Harbor Laboratory) PreprintOpen access 7 Jan 2026 1
49 Validation of Clinical Dynamic Contrast-Enhanced Magnetic Resonance Imaging Perfusion Modeling and Neoadjuvant Chemotherapy Response Prediction in Breast Cancer Using 18 FDG and 64 Cu-DOTA-Trastuzumab Positron Emission Tomography Studies John Whitman, Vikram Adhikarla, Lusine Tumyan et al. · JCO Clinical Cancer Informatics Open access 2025 1
50 A Filosofia por trás da conversação: implicaturas e os atos de discurso indiretos Euclides Barbosa Ramos de Souza · Bakhtiniana Revista de Estudos do Discurso Open access 17 Apr 2023 1

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.