Institution · Stony Brook University
Most cited papers from Stony Brook University
Stony Brook University
What are the most cited papers from Stony Brook University?
The most cited paper from Stony Brook University is "A global reference for human genetic variation" (Corresponding authors et al., 2015), with 20,444 citations. Next come "Salmon provides fast and bias-aware quantification of transcript expression" (14,211) and "ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB" (11,534).
Showing 50 of 59 papers. Every paper with more than 3,024 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | A global reference for human genetic variation Corresponding authors et al. · Nature | 29 Sep 2015 | 20,444 |
| 2 | Salmon provides fast and bias-aware quantification of transcript expression Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods | 6 Mar 2017 | 14,211 |
| 3 | ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB James Maier, Carmenza Martinez, Koushik Kasavajhala et al. · Journal of Chemical Theory and Computation | 7 Jul 2015 | 11,534 |
| 4 | Observation of a new particle in the search for the Standard Model Higgs boson with the ATLAS detector at the LHC G. Aad et al. · Physics Letters B | 14 Aug 2012 | 10,856 |
| 5 | The Amber biomolecular simulation programs David Andrew Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry | 30 Sep 2005 | 9,778 |
| 6 | Novel methods improve prediction of species’ distributions from occurrence data Jane Elith et al. · Ecography | 29 Mar 2006 | 9,223 |
| 7 | DeepWalk Bryan Perozzi, Rami Al-Rfou, Steven Skiena | 22 Aug 2014 | 8,705 |
| 8 | Integrative analysis of 111 reference human epigenomes Anshul Kundaje et al. · Nature | 17 Feb 2015 | 7,245 |
| 9 | Comparison of multiple Amber force fields and development of improved protein backbone parameters Viktor Horn̆ák, Robert Abel, Asim Okur et al. · Proteins Structure Function and Bioinformatics | 15 Sep 2006 | 7,174 |
| 10 | Development of criteria for the classification and reporting of osteoarthritis: Classification of osteoarthritis of the knee Roy Davis Altman et al. · Arthritis & Rheumatism | Aug 1986 | 6,848 |
| 11 | Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018 Lorenzo Galluzzi et al. · Cell Death and Differentiation | 23 Jan 2018 | 6,760 |
| 12 | Ecological Momentary Assessment Saul S. Shiffman, Arthur A. Stone, Michael R. Hufford · Annual Review of Clinical Psychology | 28 Nov 2007 | 6,479 |
| 13 | Review of Particle Physics Particle Data Group et al. · Progress of Theoretical and Experimental Physics | Aug 2022 | 6,346 |
| 14 | Infectious Diseases Society of America/American Thoracic Society Consensus Guidelines on the Management of Community-Acquired Pneumonia in Adults Lionel A. Mandell, Richard G. Wunderink, Antonio Anzueto et al. · Clinical Infectious Diseases | 3 Feb 2007 | 6,286 |
| 15 | A novel genetic system to detect protein–protein interactions Stanley Fields, Ok-Kyu Song · Nature | Jul 1989 | 6,181 |
| 16 | Cutaneous Wound Healing Adam J. Singer, Richard A.F. Clark · New England Journal of Medicine | 2 Sep 1999 | 6,150 |
| 17 | The Fatigue Severity Scale Lauren Krupp · Archives of Neurology | Oct 1989 | 6,141 |
| 18 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Daniel J. Klionsky et al. · Autophagy | 2 Jan 2016 | 6,023 |
| 19 | Materials science and engineering: An introduction Clive R. Clayton · Materials Science and Engineering | Oct 1987 | 5,968 |
| 20 | A Paravascular Pathway Facilitates CSF Flow Through the Brain Parenchyma and the Clearance of Interstitial Solutes, Including Amyloid β Jeffrey J. Iliff, Minghuan Wang, Yonghong Liao et al. · Science Translational Medicine | 15 Aug 2012 | 5,906 |
| 21 | The Fourier Transform and Its Applications R. N. Bracewell, Peter B. Kahn · American Journal of Physics | Aug 1966 | 5,458 |
| 22 | Classification criteria for Sjögren's syndrome: a revised version of the European criteria proposed by the American-European Consensus Group Claudio Vitali, S Bombardieri, R Jonsson et al. · Annals of the Rheumatic Diseases | Jun 2002 | 5,366 |
| 23 | The Patient-Reported Outcomes Measurement Information System (PROMIS) developed and tested its first wave of adult self-reported health outcome item banks: 2005–2008 David F Cella et al. · Journal of Clinical Epidemiology | 5 Aug 2010 | 5,243 |
| 24 | Dynamics of the dissipative two-state system A. J. Leggett, Sudip Chakravarty, Alan T. Dorsey et al. · Reviews of Modern Physics | 1987 | 5,191 |
| 25 | Evidence for Oscillation of Atmospheric Neutrinos Y. Fukuda et al. · Physical Review Letters | 24 Aug 1998 | 5,135 |
| 26 | Surviving Sepsis Campaign: International guidelines for management of severe sepsis and septic shock: 2008 R. Phillip Dellinger et al. · Intensive Care Medicine | 3 Dec 2007 | 4,947 |
| 27 | THE META-ANALYSIS OF RESPONSE RATIOS IN EXPERIMENTAL ECOLOGY Larry Vernon Hedges, Jessica Gurevitch, Peter S. Curtis · Ecology | Jun 1999 | 4,699 |
| 28 | Labeled Faces in the Wild: A Database forStudying Face Recognition in Unconstrained Environments Gary B. Huang, Marwan Mattar, Tamara L. Berg et al. · HAL (Le Centre pour la Communication Scientifique Directe) | Oct 2008 | 4,502 |
| 29 | Motivated Skepticism in the Evaluation of Political Beliefs Charles S. Taber, Milton G. Lodge · American Journal of Political Science | 21 Jun 2006 | 4,388 |
| 30 | Extensions of the Procrustes Method for the Optimal Superimposition of Landmarks F. James Rohlf, Dennis E. Slice · Systematic Zoology | Mar 1990 | 4,332 |
| 31 | The ATLAS Experiment at the CERN Large Hadron Collider G. Aad et al. · Journal of Instrumentation | 14 Aug 2008 | 4,271 |
| 32 | Trophic Downgrading of Planet Earth James A. Estes et al. · Science | 14 Jul 2011 | 4,114 |
| 33 | The 2011 Report on Dietary Reference Intakes for Calcium and Vitamin D from the Institute of Medicine: What Clinicians Need to Know A. Catharine Ross, JoAnn E. Manson, Steven A. Abrams et al. · The Journal of Clinical Endocrinology & Metabolism | 30 Nov 2010 | 4,078 |
| 34 | Management of Adults With Hospital-acquired and Ventilator-associated Pneumonia: 2016 Clinical Practice Guidelines by the Infectious Diseases Society of America and the American Thoracic Society André C. Kalil, Mark L. Metersky, Michael Klompas et al. · Clinical Infectious Diseases | 14 Jul 2016 | 4,027 |
| 35 | A framework for advancing our understanding of cancer-associated fibroblasts Erik A. Sahai et al. · Nature reviews. Cancer | 24 Jan 2020 | 3,962 |
| 36 | The 16-Item quick inventory of depressive symptomatology (QIDS), clinician rating (QIDS-C), and self-report (QIDS-SR): a psychometric evaluation in patients with chronic major depression Augustus John Rush, Madhukar H. Trivedi, Hicham M. Ibrahim et al. · Biological Psychiatry | 23 Apr 2003 | 3,950 |
| 37 | Recent Advances in Electrocatalysts for Oxygen Reduction Reaction Minhua Shao, Qiaowan Chang, Jean‐Pol Dodelet et al. · Chemical Reviews | 17 Feb 2016 | 3,918 |
| 38 | The absolute energy positions of conduction and valence bands of selected semiconducting minerals Yong Xu, Martin A. A. Schoonen · American Mineralogist | Mar 2000 | 3,869 |
| 39 | Solitons in conducting polymers Alan J. Heeger, Steven Allan Kivelson, J. R. Schrieffer et al. · Reviews of Modern Physics | Jul 1988 | 3,845 |
| 40 | Association of apolipoprotein E allele ϵ4 with late‐onset familial and sporadic Alzheimer's disease Ann M. Saunders, Warren J. Strittmatter, D. E. Schmechel et al. · Neurology | Aug 1993 | 3,830 |
| 41 | Transition temperature of strong-coupled superconductors reanalyzed Philip B. Allen, R. C. Dynes · Physical review. B, Solid state | Aug 1975 | 3,656 |
| 42 | Glutamate Receptor Ion Channels: Structure, Regulation, and Function Stephen F. Traynelis, Lonnie P. Wollmuth, Chris J. McBain et al. · Pharmacological Reviews | 17 Aug 2010 | 3,615 |
| 43 | Image Formation by Induced Local Interactions: Examples Employing Nuclear Magnetic Resonance Paul C. Lauterbur · Nature | Mar 1973 | 3,581 |
| 44 | Survival in Patients with Primary Pulmonary Hypertension Gilbert E. D’Alonzo, Robyn J. Barst, Stephen M. Ayres et al. · Annals of Internal Medicine | Sep 1991 | 3,528 |
| 45 | Review of Particle Physics Sergio Navas et al. · Physical review. D/Physical review. D. | Aug 2024 | 3,524 |
| 46 | A Survey Method for Characterizing Daily Life Experience: The Day Reconstruction Method Daniel J. Kahneman, Alan B. Krueger, David A Schkade et al. · Science | 2 Dec 2004 | 3,464 |
| 47 | The ClusPro web server for protein–protein docking Dima Kozakov, David R. Hall, Bing Xia et al. · Nature Protocols | 12 Jan 2017 | 3,460 |
| 48 | The Use of Single-Subject Research to Identify Evidence-Based Practice in Special Education Robert H. Horner, Edward G. Carr, James W. Halle et al. · Exceptional Children | 2005 | 3,372 |
| 49 | The Hierarchical Taxonomy of Psychopathology (HiTOP): A dimensional alternative to traditional nosologies. Roman Kotov et al. · Journal of Abnormal Psychology | 23 Mar 2017 | 3,357 |
| 50 | Surviving Sepsis Campaign guidelines for management of severe sepsis and septic shock R. Phillip Dellinger, Jean M. Carlet, Henry Masur et al. · Intensive Care Medicine | 3 Mar 2004 | 3,339 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.