Most cited papers from Universitat Pompeu Fabra

Universitat Pompeu Fabra

What are the most cited papers from Universitat Pompeu Fabra?

The most cited paper from Universitat Pompeu Fabra is "An integrated encyclopedia of DNA elements in the human genome" (Ian Dunham et al., 2012), with 19,751 citations. Next come "GSVA: gene set variation analysis for microarray and RNA-Seq data" (17,089) and "trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses" (14,201).

Published TypeFieldAccessAuthorsCitations

Showing 50 of 59 papers. Every paper with more than 2,251 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	An integrated encyclopedia of DNA elements in the human genome Ian Dunham et al. · Nature Open access442 authors	Sep 2012	19,751
2	GSVA: gene set variation analysis for microarray and RNA-Seq data Sonja Hänzelmann, Robert Castelo, Justin Guinney · BMC Bioinformatics Open access	16 Jan 2013	17,089
3	trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón · Bioinformatics Open access	8 Jun 2009	14,201
4	Sarcopenia: revised European consensus on definition and diagnosis Alfonso José Cruz-Jentoft et al. · Age and Ageing Open access	24 Sep 2018	14,151
5	The Sequence of the Human Genome J. Craig Venter et al. · Science 273 authors	16 Feb 2001	13,717
6	Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines Clotilde Théry et al. · Journal of Extracellular Vesicles Open access382 authors	23 Nov 2018	11,535
7	What Will 5G Be? Jeffrey G. Andrews, Stefano Buzzi, Wan Choi et al. · IEEE Journal on Selected Areas in Communications Open access	Jun 2014	8,314
8	Global, regional, and national comparative risk assessment of 79 behavioural, environmental and occupational, and metabolic risks or clusters of risks, 1990–2015: a systematic analysis for the Global Burden of Disease Study 2015 Mohammad Hossein Forouzanfar et al. · The Lancet Open access654 authors	Oct 2016	7,829
9	Initial sequencing and comparative analysis of the mouse genome Asif T. Chinwalla et al. · Nature Open access223 authors	Dec 2002	7,343
10	REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms Fran Supek, Matko Bošnjak, Nives Škunca et al. · PLoS ONE Open access	18 Jul 2011	7,079
11	DnaSP, DNA polymorphism analyses by the coalescent and other methods Julio Rozas, Juan Carlos Sánchez-DelBarrio, Xavier Messeguer et al. · Bioinformatics Open access	10 Dec 2003	6,211
12	Biological properties of extracellular vesicles and their physiological functions María Yáñez‐Mó et al. · Journal of Extracellular Vesicles Open access	2015	6,130
13	Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Daniel J. Klionsky et al. · Autophagy Open access2,467 authors	2 Jan 2016	6,023
14	Landscape of transcription in human cells Sarah Djebali et al. · Nature Open access	Sep 2012	5,447
15	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Ewan Birney et al. · Nature Open access312 authors	Jun 2007	5,310
16	The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression Thomas Derrien et al. · Genome Research Open access	Sep 2012	5,308
17	GENCODE: The reference human genome annotation for The ENCODE Project Jennifer Harrow et al. · Genome Research Open access	Sep 2012	5,112
18	The Science of Monetary Policy: A New Keynesian Perspective Richard H. Clarida, Jordi Gaĺı, Mark L. Gertler · Journal of Economic Literature	Dec 1999	5,036
19	A Scaled Difference Chi-Square Test Statistic for Moment Structure Analysis Albert Satorra, Peter M. Bentler · Psychometrika	Dec 2001	5,029
20	Genetic effects on gene expression across human tissues François Aguet et al. · Nature Open access250 authors	10 Oct 2017	4,762
21	Neural Architectures for Named Entity Recognition Guillaume Lample, Miguel Ballesteros, Sandeep K. Subramanian et al. Conference paperOpen access	2016	4,507
22	Nextflow enables reproducible computational workflows Paolo Di Tommaso, Maria Chatzou, Evan W. Floden et al. · Nature Biotechnology	Apr 2017	4,440
23	Global variation in copy number in the human genome Richard Redon et al. · Nature Open access	Nov 2006	4,397
24	The nf-core framework for community-curated bioinformatics pipelines Philip Ewels, Alexander Peltzer, Sven Fillinger et al. · Nature Biotechnology Open access	13 Feb 2020	4,389
25	Five disruptive technology directions for 5G Federico Boccardi, Robert W. Heath, Angel Lozano et al. · IEEE Communications Magazine Open access	Feb 2014	3,882
26	The repertoire of mutational signatures in human cancer Ludmil B. Alexandrov et al. · Nature Open access1,384 authors	5 Feb 2020	3,854
27	Image inpainting Marcelo Bertalmı́o, Guillermo Sapiro, V. Caselles et al. Conference paperOpen access	2000	3,634
28	GENCODE reference annotation for the human and mouse genomes Adam Frankish et al. · Nucleic Acids Research Open access	8 Oct 2018	3,568
29	The tomato genome sequence provides insights into fleshy fruit evolution Hideki Hirakawa et al. · Nature Open access271 authors	May 2012	3,442
30	Pan-cancer analysis of whole genomes Lauri A. Aaltonen et al. · Nature Open access1,324 authors	5 Feb 2020	3,360
31	Towards complete and error-free genome assemblies of all vertebrate species Arang Rhie et al. · Nature Open access129 authors	28 Apr 2021	3,311
32	A multisociety Delphi consensus statement on new fatty liver disease nomenclature Mary Eugenia Rinella et al. · Hepatology Open access	22 Jun 2023	3,191
33	Inflation dynamics: A structural econometric analysis Jordi Gaĺı, Mark L. Gertler · Journal of Monetary Economics Open access	Oct 1999	3,161
34	A well-conditioned estimator for large-dimensional covariance matrices Olivier Ledoit, Michael Wolf · Journal of Multivariate Analysis Open access	16 Jul 2003	3,093
35	A global survey of potential acceptance of a COVID-19 vaccine Jeffrey Victor Lazarus, Scott C. Ratzan, Adam Palayew et al. · Nature Medicine Open access	20 Oct 2020	3,081
36	Mapping genomic loci implicates genes and synaptic biology in schizophrenia Vassily Vladimirovich Trubetskoy et al. · Nature Open access613 authors	8 Apr 2022	2,894
37	DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants Janet Piñero, Álex Bravo, Núria Queralt-Rosiñach et al. · Nucleic Acids Research Open access	18 Oct 2016	2,874
38	The DisGeNET knowledge platform for disease genomics: 2019 update Janet Piñero, Juan Manuel Ramírez‐Anguita, Josep Saüch-Pitarch et al. · Nucleic Acids Research Open access	18 Oct 2019	2,815
39	Human papillomavirus genotype attribution in invasive cervical cancer: a retrospective cross-sectional worldwide study Silvia de Sanjosé et al. · The Lancet Oncology	18 Oct 2010	2,774
40	Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 Daniel J. Klionsky et al. · Autophagy Open access2,930 authors	2 Jan 2021	2,743
41	Ensuring Positiveness of the Scaled Difference Chi-square Test Statistic Albert Satorra, Peter M. Bentler · Psychometrika Open access	18 Jun 2009	2,724
42	Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2017 Christina Fitzmaurice et al. · JAMA Oncology Open access628 authors	27 Sep 2019	2,699
43	The transcription factor Snail is a repressor of E-cadherin gene expression in epithelial tumour cells Eduard Batlle, Elena Lanchares Sancho, Clara Francı́ et al. · Nature Cell Biology	13 Jan 2000	2,690
44	Expanded encyclopaedias of DNA elements in the human and mouse genomes Federico Abascal et al. · Nature Open access566 authors	29 Jul 2020	2,676
45	ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data Jaime Huerta‐Cepas, François Serra, Peer Bork · Molecular Biology and Evolution Open access	26 Feb 2016	2,606
46	Global estimates of mortality associated with long-term exposure to outdoor fine particulate matter Richard T. Burnett et al. · Proceedings of the National Academy of Sciences Open access	4 Sep 2018	2,561
47	Exploring pathways linking greenspace to health: Theoretical and methodological guidance Iana Markevych, Julia Schoierer, Terry Hartig et al. · Environmental Research Open access	30 Jun 2017	2,550
48	Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LaDeana W. Hillier et al. · Nature 174 authors	9 Dec 2004	2,532
49	Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study Ting Shi et al. · The Lancet ReviewOpen access122 authors	7 Jul 2017	2,491
50	Global Burden of Hypertension and Systolic Blood Pressure of at Least 110 to 115 mm Hg, 1990-2015 Mohammad Hossein Forouzanfar et al. · JAMA Open access	10 Jan 2017	2,464

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.