Institution · Windber Research Institute

Most cited papers from Windber Research Institute

Windber Research Institute

What are the most cited papers from Windber Research Institute?

The most cited paper from Windber Research Institute is "The Immune Landscape of Cancer" (Vésteinn Thórsson et al., 2018), with 6,328 citations. Next come "An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics" (4,058) and "Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas" (1,249).

Published TypeFieldAccessAuthorsCitations

Showing 50 of 58 papers. Every paper with more than 49 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	The Immune Landscape of Cancer Vésteinn Thórsson et al. · Immunity Open access784 authors	Apr 2018	6,328
2	An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics Jianfang Liu et al. · Cell Open access740 authors	Apr 2018	4,058
3	Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas Theo Knijnenburg et al. · Cell Reports Open access763 authors	Apr 2018	1,249
4	Genomic and Functional Approaches to Understanding Cancer Aneuploidy Alison Marie Taylor et al. · Cancer Cell Open access739 authors	Apr 2018	1,213
5	Biospecimen Reporting for Improved Study Quality (BRISQ) Helen M. Moore, Andréa B. Kelly, Scott D. Jewell et al. · Journal of Proteome Research Open access	17 May 2011	336
6	Comparison of Breast Cancer Molecular Features and Survival by African and European Ancestry in The Cancer Genome Atlas Dezheng Huo, Hai Dong Hu, Suhn K. Rhie et al. · JAMA Oncology Open access	4 May 2017	290
7	Molecular heterogeneity in breast cancer: State of the science and implications for patient care Rachel E. Ellsworth, Heather L. Blackburn, Craig D. Shriver et al. · Seminars in Cell and Developmental Biology Open access	31 Aug 2016	191
8	High‐throughput proteomic analysis of human infiltrating ductal carcinoma of the breast Richard Idem Somiari, Anthony G. Sullivan, Stephen Russell et al. · PROTEOMICS	Oct 2003	186
9	Standard Preanalytical Coding for Biospecimens: Review and Implementation of the Sample PREanalytical Code (SPREC) Sabine Michaela Lehmann et al. · Biopreservation and Biobanking Open access	Aug 2012	185
10	Combined Clinical Trial Results of a HER2/neu(E75) Vaccine for the Prevention of Recurrence in High-Risk Breast Cancer Patients: U.S. Military Cancer Institute Clinical Trials Group Study I-01 and I-02 George Earl Peoples, Jarrod P. Holmes, Matthew T. Hueman et al. · Clinical Cancer Research	Feb 2008	182
11	Assessing semantic similarity measures for the characterization of human regulatory pathways Xiang Guo, Rongxiang Liu, Craig D. Shriver et al. · Bioinformatics Open access	21 Feb 2006	181
12	Genome assembly comparison identifies structural variants in the human genome Razi Khaja, Junjun Zhang, Jeffrey R. MacDonald et al. · Nature Genetics Open access	19 Nov 2006	166
13	Identifier mapping performance for integrating transcriptomics and proteomics experimental results Roger Day, Kevin K. McDade, Uma R. Chandran et al. · BMC Bioinformatics Open access	27 May 2011	165
14	Effect of ASCO/CAP Guidelines for Determining ER Status on Molecular Subtype Brenda Deyarmin, Jennifer L. Kane, Allyson L. Valente et al. · Annals of Surgical Oncology	8 Aug 2012	151
15	Hypertension is an independent predictor of survival disparity between African‐American and white breast cancer patients Dejana Braithwaite, Martin Carl Tammemägi, Dan H. Moore et al. · International Journal of Cancer	9 Oct 2008	138
16	Slow Molecular Clocks in Old World Monkeys, Apes, and Humans Soojin V. Yi, Darrell L. Ellsworth, Wen‐Hsiung Li · Molecular Biology and Evolution Open access	Dec 2002	138
17	Circulating MMP2 and MMP9 in breast cancer—Potential role in classification of patients into low risk, high risk, benign disease and breast cancer categories Stella Somiari, Richard Idem Somiari, Caroline Heckman et al. · International Journal of Cancer Open access	13 Apr 2006	137
18	Development of the ISBER Best Practices for Repositories: Collection, Storage, Retrieval and Distribution of Biological Materials for Research Lori Campbell, Fay Betsou, Debra Leiolani Garcia et al. · Biopreservation and Biobanking	Apr 2012	136
19	Heritability of Coronary Artery Calcium Quantity Measured by Electron Beam Computed Tomography in Asymptomatic Adults Patricia A. Peyser, Lawrence F. Bielak, Julia S. F. Chu et al. · Circulation Open access	16 Jul 2002	131
20	Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types Zhongqi Ge et al. · Cell Reports Open access741 authors	Apr 2018	128
21	Direct Target Network of the Neurospora crassa Plant Cell Wall Deconstruction Regulators CLR-1, CLR-2, and XLR-1 James P. Craig, Samuel T. Coradetti, Trevor L. Starr et al. · mBio Open access	14 Oct 2015	119
22	Outcome disparities in African American women with triple negative breast cancer: a comparison of epidemiological and molecular factors between African American and Caucasian women with triple negative breast cancer Lori A. Sturtz, Jen Melley, Kim Mamula et al. · BMC Cancer Open access	4 Feb 2014	118
23	The Impact of HER2/neuExpression Level on Response to the E75 Vaccine: From U.S. Military Cancer Institute Clinical Trials Group Study I-01 and I-02 Linda C. Benavides, Jeremy D. Gates, Mark G. Carmichael et al. · Clinical Cancer Research	8 Apr 2009	116
24	Human Biospecimen Research: Experimental Protocol and Quality Control Tools Fotini Betsou, Rebecca O. Barnes, Thomas W. Burke et al. · Cancer Epidemiology Biomarkers & Prevention	Apr 2009	113
25	Proteomics of breast carcinoma Richard Idem Somiari, Stella Somiari, Stephen J. Russell et al. · Journal of Chromatography B	16 Dec 2004	108
26	A gene expression signature that defines breast cancer metastases Rachel E. Ellsworth, Jeff Seebach, Lori A. Field et al. · Clinical & Experimental Metastasis	27 Dec 2008	105
27	Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions Yan Ping Chen, Jeffery Stuart Pettis, Yan Zhao et al. · BMC Genomics Open access	2013	101
28	The prognostic significance of multiple morphologic features and biologic markers in ductal carcinoma in situ of the breast Dennis B. Cornfield, Juan Palazzo, Gordon Francis Schwartz et al. · Cancer	27 Apr 2004	100
29	Breast Cancer in the Personal Genomics Era Rachel E. Ellsworth, David J. Decewicz, Craig D. Shriver et al. · Current Genomics Open access	13 Apr 2010	94
30	Identification of Evidence-Based Biospecimen Quality-Control Tools Fotini Betsou, Elaine W. Gunter, Judith Ann Clements et al. · Journal of Molecular Diagnostics Open access	27 Nov 2012	89
31	Identification of differentially expressed genes in breast tumors from African American compared with Caucasian women Lori A. Field, Brad Love, Brenda Deyarmin et al. · Cancer Open access	28 Jul 2011	86
32	Proteogenomic analysis of lung adenocarcinoma reveals tumor heterogeneity, survival determinants, and therapeutically relevant pathways Anthony R. Soltis et al. · Cell Reports Medicine Open access	Nov 2022	78
33	Single‐cell sequencing and tumorigenesis: improved understanding of tumor evolution and metastasis Darrell L. Ellsworth, Heather L. Blackburn, Craig D. Shriver et al. · Clinical and Translational Medicine Open access	12 Apr 2017	76
34	Deterministic and Stochastic Elements of Axonal Guidance Susan Maskery, Troy Shinbrot · Annual Review of Biomedical Engineering Review	27 Apr 2005	75
35	Low levels of Stat5a protein in breast cancer are associated with tumor progression and unfavorable clinical outcomes Amy R. Peck, Agnieszka Katarzyna Witkiewicz, Chengbao Liu et al. · Breast Cancer Research Open access	4 Oct 2012	75
36	Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line Jeyakumar Natarajan, Daniel Berrar, Werner Dubitzky et al. · BMC Bioinformatics Open access	10 Aug 2006	71
37	Role for chondroitin sulfate glycosaminoglycan in NEDD9-mediated breast cancer cell growth Joji Iida, Jesse Dorchak, Rebecca Clancy et al. · Experimental Cell Research	16 Nov 2014	71
38	Does Breast Tumor Heterogeneity Necessitate Further Immunohistochemical Staining on Surgical Specimens? Lauren T. Greer, Martin Rosman, Charles W. Mylander et al. · Journal of the American College of Surgeons	6 Nov 2012	71
39	Tumour location within the breast: Does tumour site have prognostic ability? Seth K. Rummel · ecancermedicalscience Open access	13 Jul 2015	71
40	Influence of the β2-adrenergic receptor Arg16Gly polymorphism on longitudinal changes in obesity from childhood through young adulthood in a biracial cohort: the Bogalusa Heart Study DL Ellsworth, SA Coady, Wei Chen et al. · International Journal of Obesity	25 Jun 2002	67
41	Plasma concentration and activity of matrix metalloproteinase 2 and 9 in patients with breast disease, breast cancer and at risk of developing breast cancer Stella Somiari, Craig D. Shriver, Caroline Heckman et al. · Cancer Letters	22 Apr 2005	66
42	Genomic instability in histologically normal breast tissues: implications for carcinogenesis Darrell L. Ellsworth, Rachel E. Ellsworth, Michael Liebman et al. · The Lancet Oncology	Dec 2004	65
43	The role of the histoblood ABO group in cancer Seth K. Rummel, Rachel E. Ellsworth · Future Science OA Open access	15 Mar 2016	64
44	PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subtyping reclassifying a subset of luminal A tumors as luminal B Praveen Kumar, Jianfang Liu, Jeffrey A. Hooke et al. · Scientific Reports Open access	28 May 2019	63
45	HYOU1/Orp150 expression in breast cancer. Alexander Stojadinovic, Jeffrey A. Hooke, Craig D. Shriver et al. · PubMed	Nov 2007	58
46	Evaluation of BRCA1 mutations in an unselected patient population with triple-negative breast cancer Seth K. Rummel, Erika L. Varner, Craig D. Shriver et al. · Breast Cancer Research and Treatment	29 Nov 2012	57
47	Outer Breast Quadrants Demonstrate Increased Levels of Genomic Instability Darrell L. Ellsworth, Rachel E. Ellsworth, Brad Love et al. · Annals of Surgical Oncology	17 Aug 2004	57
48	Standard PREanalytical Code Version 3.0 Fay Betsou et al. · Biopreservation and Biobanking Open access	29 Jan 2018	56
49	An Introduction to Bioinformatics Henry Brzeski · Humana Press eBooks Book chapter	15 Nov 2003	56
50	Comparison of bullying of food-allergic versus healthy schoolchildren in Italy Antonella Maria Muraro, Laura Polloni, Francesca Lazzarotto et al. · Journal of Allergy and Clinical Immunology Open access	18 Jul 2014	52

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.