| 1 |
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
Rod Peakall, Peter E. Smouse · Molecular Ecology Notes
|
29 Sep 2005 |
16,827 |
| 2 |
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
Dent A. Earl, Bridgett M. vonHoldt · Conservation Genetics Resources
|
12 Oct 2011 |
12,797 |
| 3 |
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury, Zhiwu S. Zhang, Dallas E. Kroon et al. · Bioinformatics
Open access |
22 Jun 2007 |
8,428 |
| 4 |
Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
Daniel Falush, Matthew Stephens, Jonathan K. Pritchard · Genetics
|
Aug 2003 |
8,144 |
| 5 |
MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
Eric S. Lander, Philip Green, Jeff Abrahamson et al. · Genomics
|
Oct 1987 |
6,709 |
| 6 |
Efficient Methods to Compute Genomic Predictions
Paul Michael VanRaden · Journal of Dairy Science
Open access |
22 Oct 2008 |
6,507 |
| 7 |
Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
Eric S. Lander, David Botstein · Genetics
Open access |
1989 |
5,337 |
| 8 |
Empirical threshold values for quantitative trait mapping.
Gary A. Churchill, Rebecca W. Doerge · Genetics
Open access |
Nov 1994 |
5,055 |
| 9 |
Interpreting findings from Mendelian randomization using the MR-Egger method
Stephen Burgess, Simon G. Thompson · European Journal of Epidemiology
Open access |
May 2017 |
4,939 |
| 10 |
Small Sample Inference for Fixed Effects from Restricted Maximum Likelihood
Michael G. Kenward, James Roger · Biometrics
|
Sep 1997 |
4,612 |
| 11 |
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
Jianming Yu, Gaël Pressoir, William H. Briggs et al. · Nature Genetics
|
25 Dec 2005 |
4,360 |
| 12 |
Plant Productivity and Environment
J. S. Boyer · Science
|
29 Oct 1982 |
3,978 |
| 13 |
Genetics and analysis of quantitative traits
James M. Cheverud · American Journal of Physical Anthropology
|
Mar 1999 |
3,916 |
| 14 |
R/qtl: QTL mapping in experimental crosses
Karl W. Broman, Hao Wu, Śaunak Sen et al. · Bioinformatics
|
30 Apr 2003 |
3,781 |
| 15 |
Stability Parameters for Comparing Varieties 1
Steve A. Eberhart, Wilbert A. Russell · Crop Science
Open access |
1966 |
3,697 |
| 16 |
Genetic Differentiation and Estimation of Gene Flow from F -Statistics Under Isolation by Distance
François Rousset · Genetics
|
Apr 1997 |
3,589 |
| 17 |
INBREEDING DEPRESSION AND ITS EVOLUTIONARY CONSEQUENCES
Deborah Charlesworth, Brian Charlesworth · Annual Review of Ecology and Systematics
Open access |
Nov 1987 |
3,370 |
| 18 |
Unrepeatable Repeatabilities: A Common Mistake
C. M. Lessells, Peter T. Boag · The Auk
Open access |
1987 |
2,970 |
| 19 |
hierfstat , a package for r to compute and test hierarchical F ‐statistics
Jérôme Goudet · Molecular Ecology Notes
Open access |
13 Dec 2004 |
2,796 |
| 20 |
Using SAS PROC MIXED to Fit Multilevel Models, Hierarchical Models, and Individual Growth Models
J. David Singer · Journal of Educational and Behavioral Statistics
|
Dec 1998 |
2,716 |
| 21 |
TRY – a global database of plant traits
Jens Kattge et al. · Global Change Biology
Open access135 authors |
26 Apr 2011 |
2,699 |
| 22 |
Maximum Likelihood Approaches to Variance Component Estimation and to Related Problems
David A. Harville · Journal of the American Statistical Association
|
Jun 1977 |
2,493 |
| 23 |
Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild
Steven D. Tanksley, Susan R. McCouch · Science
|
22 Aug 1997 |
2,414 |
| 24 |
Breeding Technologies to Increase Crop Production in a Changing World
Mark A. Tester, Peter Langridge · Science
|
11 Feb 2010 |
2,349 |
| 25 |
BIOSYS-1: a FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics
David L. Swofford, Richard Brent Selander · Journal of Heredity
|
Jul 1981 |
2,338 |
| 26 |
Analyzing developmental trajectories: A semiparametric, group-based approach.
Daniel S. Nagin · Psychological Methods
|
Jun 1999 |
2,326 |
| 27 |
Mixed linear model approach adapted for genome-wide association studies
Zhiwu S. Zhang, Elhan S. Ersoz, Chao‐Qiang Lai et al. · Nature Genetics
Open access |
7 Mar 2010 |
2,300 |
| 28 |
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
B. C. Y. Collard, D. J. Mackill · Philosophical Transactions of the Royal Society B Biological Sciences
Open access |
22 Aug 2007 |
2,294 |
| 29 |
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
Jeffrey B. Endelman · The Plant Genome
Open access |
Nov 2011 |
2,294 |
| 30 |
A Correlation and Path‐Coefficient Analysis of Components of Crested Wheatgrass Seed Production 1
Douglas R. Dewey, Kai Lu · Agronomy Journal
|
Sep 1959 |
2,292 |
| 31 |
Extended Bayesian information criteria for model selection with large model spaces
Jie Chen, Zehua Chen · Biometrika
|
29 Aug 2008 |
2,114 |
| 32 |
A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
Chris Simon Haley, Sara Knott · Heredity
Open access |
Oct 1992 |
2,089 |
| 33 |
QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations
Lei Meng, Huihui Li, Luyan Zhang et al. · The Crop Journal
Open access |
23 Feb 2015 |
2,081 |
| 34 |
PedCheck: A Program for Identification of Genotype Incompatibilities in Linkage Analysis
Jeffrey R. O'Connell, Daniel E. Weeks · The American Journal of Human Genetics
Open access |
Jul 1998 |
2,066 |
| 35 |
Heritability in the genomics era — concepts and misconceptions
Peter M. Visscher, William George Hill, Naomi R. Wray · Nature Reviews Genetics
Review |
4 Mar 2008 |
2,009 |
| 36 |
Efficient Control of Population Structure in Model Organism Association Mapping
Hyun Min Kang, Noah Zaitlen, Claire M. Wade et al. · Genetics
Open access |
Mar 2008 |
1,993 |
| 37 |
Cultivar Evaluation and Mega‐Environment Investigation Based on the GGE Biplot
Weikai Yan, L. A. Hunt, Qinglai Sheng et al. · Crop Science
|
May 2000 |
1,979 |
| 38 |
Quasi-likelihood functions, generalized linear models, and the Gauss—Newton method
R. W. M. Wedderburn · Biometrika
|
1974 |
1,961 |
| 39 |
Calculating statistical power in Mendelian randomization studies
Marie‐Jo Brion, Konstantin Shakhbazov, Peter M. Visscher · International Journal of Epidemiology
Open access |
23 Oct 2012 |
1,947 |
| 40 |
Genomic Selection in Plant Breeding: Methods, Models, and Perspectives
José Crossa, Paulino Pérez‐Rodríguez, Jaime Cuevas et al. · Trends in Plant Science
ReviewOpen access |
28 Sep 2017 |
1,924 |
| 41 |
Characterization of polyploid wheat genomic diversity using a high‐density 90 000 single nucleotide polymorphism array
Shichen Wang et al. · Plant Biotechnology Journal
Open access |
20 Mar 2014 |
1,924 |
| 42 |
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
Jesse Poland, Patrick J. Brown, Mark E. Sorrells et al. · PLoS ONE
Open access |
28 Feb 2012 |
1,891 |
| 43 |
COLONY: a program for parentage and sibship inference from multilocus genotype data
Owen R. Jones, Jinliang Wang · Molecular Ecology Resources
|
21 Oct 2009 |
1,888 |
| 44 |
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
Susanna Atwell et al. · Nature
Open access |
23 Mar 2010 |
1,876 |
| 45 |
Invited review: Genomic selection in dairy cattle: Progress and challenges
Ben J. Hayes, P.J. Bowman, Amanda Jane Chamberlain et al. · Journal of Dairy Science
Open access |
22 Jan 2009 |
1,866 |
| 46 |
A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
Daryl J. Somers, Peter G. Isaac, Keith J. Edwards · Theoretical and Applied Genetics
|
28 Jul 2004 |
1,813 |
| 47 |
An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts
B. C. Y. Collard, M. Z. Z. Jahufer, Jan Bert Brouwer et al. · Euphytica
Open access |
2005 |
1,800 |
| 48 |
The advantages and limitations of trait analysis with GWAS: a review
Arthur Korte, Ashley Farlow · Plant Methods
Open access |
2013 |
1,795 |
| 49 |
Genome-Wide Regression and Prediction with the BGLR Statistical Package
Paulino Pérez‐Rodríguez, Gustavo de los Campos · Genetics
Open access |
9 Jul 2014 |
1,761 |
| 50 |
Structure of Linkage Disequilibrium in Plants
Sherry A. Flint-Garcia, Jeffry M. Thornsberry, Edward S. Buckler · Annual Review of Plant Biology
Review |
12 May 2003 |
1,759 |