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Most cited papers in Plant Gene Expression Analysis

What are the most cited papers in Plant Gene Expression Analysis?

The most cited paper in Plant Gene Expression Analysis is "A novel genetic system to detect protein–protein interactions" (Stanley Fields, Ok-Kyu Song, 1989), with 6,181 citations. Next come "Reactive oxygen gene network of plants" (5,650) and "MYB transcription factors in Arabidopsis" (5,164).

Showing 50 of 100 papers. Every paper with more than 1,198 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 A novel genetic system to detect protein–protein interactions Stanley Fields, Ok-Kyu Song · Nature Jul 1989 6,181
2 Reactive oxygen gene network of plants Ron Mittler, Sandy Vanderauwera, Martin Gollery et al. · Trends in Plant Science Review 17 Sep 2004 5,650
3 MYB transcription factors in Arabidopsis Christian Dubos, Ralf Stracke, Erich Grotewold et al. · Trends in Plant Science Review 31 Jul 2010 5,164
4 Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes Audrey P. Gasch, Paul T. Spellman, Camilla M. Kao et al. · Molecular Biology of the Cell Open access Dec 2000 4,991
5 The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) Gerald A. Tuskan et al. · Science Open access110 authors 15 Sep 2006 4,498
6 Lignin Biosynthesis Wout Boerjan, John Ralph, Marie Baucher · Annual Review of Plant Biology Review 12 May 2003 4,458
7 Proline: a multifunctional amino acid László Szabados, Arnould Savouré · Trends in Plant Science Review 24 Dec 2009 4,358
8 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Olivier Jaillon et al. · Nature Open access 26 Aug 2007 3,997
9 Advances in flavonoid research since 1992 Jeffrey B. Harborne, Christine A. Williams · Phytochemistry Nov 2000 3,961
10 Stress-Induced Phenylpropanoid Metabolism. Richard Arthur Dixon, Nancy L. Paiva · The Plant Cell Open access Jul 1995 3,827
11 Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology A. Winkel · PLANT PHYSIOLOGY Jun 2001 3,789
12 A simple and efficient method for isolating RNA from pine trees Shujun Chang, Jeff Puryear, John W. G. CAIRNEY · Plant Molecular Biology Reporter Jun 1993 3,633
13 Induction of autophagy and inhibition of tumorigenesis by beclin 1 Xiao Huan Liang, Saadiya Jackson, Matthew N. J. Seaman et al. · Nature Dec 1999 3,347
14 Phenylpropanoid Biosynthesis Thomas Vogt · Molecular Plant Open access 24 Dec 2009 3,163
15 The WRKY superfamily of plant transcription factors Thomas Eulgem, Paul J. Rushton, Silke Robatzek et al. · Trends in Plant Science Review May 2000 3,159
16 Two Transcription Factors, DREB1 and DREB2, with an EREBP/AP2 DNA Binding Domain Separate Two Cellular Signal Transduction Pathways in Drought- and Low-Temperature-Responsive Gene Expression, Respectively, in Arabidopsis Qiang Liu, Mie Kasuga, Yoh Sakuma et al. · The Plant Cell Open access Aug 1998 3,093
17 TRANSCRIPTIONAL REGULATORY NETWORKS IN CELLULAR RESPONSES AND TOLERANCE TO DEHYDRATION AND COLD STRESSES Kazuko Yamaguchi‐Shinozaki, Kazuo Shinozaki · Annual Review of Plant Biology Review 7 Apr 2006 3,044
18 Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes José Luis Riechmann, Jacqueline E. Heard, Greg S. Martin et al. · Science 15 Dec 2000 2,887
19 WRKY transcription factors Paul J. Rushton, Imre E. Somssich, Patricia Ringler et al. · Trends in Plant Science 23 Mar 2010 2,837
20 Lignin Biosynthesis and Structure Ruben Vanholme, Brecht Demedts, Kris Morreel et al. · PLANT PHYSIOLOGY Open access 14 May 2010 2,709
21 Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids Yoshikazu Tanaka, Nobuhiro Sasaki, Akemi Ohmiya · The Plant Journal May 2008 2,570
22 Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice Toshitsugu Nakano, Kaoru Suzuki, Tatsuhito Fujimura et al. · PLANT PHYSIOLOGY Open access 11 Jan 2006 2,412
23 Isochorismate synthase is required to synthesize salicylic acid for plant defence Mary C. Wildermuth, Julia Dewdney, Gang Wu et al. · Nature 29 Nov 2001 2,410
24 Plant hormone-mediated regulation of stress responses Vivek Chandra Verma, Pratibha Ravindran, Prakash P. Kumar · BMC Plant Biology Open access 14 Apr 2016 2,317
25 The R2R3-MYB gene family in Arabidopsis thaliana Ralf Stracke, Martin Werber, Bernd Weißhaar · Current Opinion in Plant Biology Review Oct 2001 2,313
26 Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks Julia Krasensky-Wrzaczek, Claudia Jonak · Journal of Experimental Botany Open access 30 Jan 2012 2,300
27 Flavonoids as antioxidants in plants: Location and functional significance Giovanni Agati, Elisa Azzarello, Susanna Pollastri et al. · Plant Science 11 Aug 2012 2,171
28 A multicolored set of in vivo organelle markers for co‐localization studies in Arabidopsis and other plants Brook K. Nelson, Xue Cai, Andreas Nebenführ · The Plant Journal 30 Jul 2007 2,153
29 Plant flavonoids: Classification, distribution, biosynthesis, and antioxidant activity Nan Shen, Tongfei A. Wang, Quan Gan et al. · Food Chemistry 23 Feb 2022 2,145
30 The F-box protein TIR1 is an auxin receptor Nihal Dharmasiri, Sunethra Dharmasiri, Mark A. Estelle · Nature May 2005 2,117
31 Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes Weijie Xu, Christian Dubos, Loı̈c Lepiniec · Trends in Plant Science Review 8 Jan 2015 2,090
32 DNA-Binding Specificity of the ERF/AP2 Domain of Arabidopsis DREBs, Transcription Factors Involved in Dehydration- and Cold-Inducible Gene Expression Yoh Sakuma, Qiang Liu, Joseph G. Dubouzet et al. · Biochemical and Biophysical Research Communications 2002 2,087
33 Response of Phenylpropanoid Pathway and the Role of Polyphenols in Plants under Abiotic Stress Anket Sharma, Babar Shahzad, Abdul Rehman et al. · Molecules Open access 4 Jul 2019 2,067
34 Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings Antonio G. González, Mingzhe Zhao, John M. Leavitt et al. · The Plant Journal Open access 23 Nov 2007 2,055
35 Leaf Senescence Pyung Ok Lim, Hyo Jung Kim, Hong Gil Nam · Annual Review of Plant Biology Review 16 Feb 2007 1,998
36 Elicitor signal transduction leading to production of plant secondary metabolites Jian Hua Zhao, Lawrence C. Davis, Robert Verpoorte · Biotechnology Advances 15 Mar 2005 1,956
37 bZIP transcription factors in Arabidopsis Marc J. Jakoby, Bernd Weißhaar, Wolfgang Dröge‐Laser et al. · Trends in Plant Science Review Mar 2002 1,907
38 Flavonoids: biosynthesis, biological functions, and biotechnological applications Marı́a Lorena Falcone Ferreyra, Sebastián Pablo Rius, Paula Casati · Frontiers in Plant Science Open access 2012 1,896
39 Biosynthesis of flavonoids and effects of stress A. Winkel · Current Opinion in Plant Biology Review Jun 2002 1,893
40 Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit Eric J. Stockinger, Sarah J. Gilmour, Michael F. Thomashow · Proceedings of the National Academy of Sciences Open access 4 Feb 1997 1,855
41 Natural products and plant disease resistance Richard Arthur Dixon · Nature Jun 2001 1,807
42 Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions Nai‐Qian Dong, Hong‐Xuan Lin · Journal of Integrative Plant Biology Open access 16 Dec 2020 1,793
43 Response of Plant Secondary Metabolites to Environmental Factors Yang Li, Kuishan Wen, Xiao Ruan et al. · Molecules Open access 27 Mar 2018 1,762
44 Dynamics and diversity in autophagy mechanisms: lessons from yeast Hitoshi Nakatogawa, Kuninori Suzuki, Yoshiaki Kamada et al. · Nature Reviews Molecular Cell Biology ReviewOpen access 3 Jun 2009 1,749
45 The Arabidopsis F-box protein TIR1 is an auxin receptor Stefan Kepinski, Ottoline Leyser · Nature May 2005 1,743
46 The genome sequence of the filamentous fungus Neurospora crassa James E. Galagan et al. · Nature Open access Apr 2003 1,725
47 Analysis and biological activities of anthocyanins Jin-Ming Kong, Lian‐Sai Chia, Ngoh-Khang Goh et al. · Phytochemistry 3 Sep 2003 1,702
48 OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought‐, high‐salt‐ and cold‐responsive gene expression Joseph G. Dubouzet, Yoh Sakuma, Yusuke Ito et al. · The Plant Journal Feb 2003 1,690
49 Flavonoids: a colorful model for the regulation and evolution of biochemical pathways Ronald E. Koes, Walter Verweij, Francesca M. Quattrocchio · Trends in Plant Science Review 29 Mar 2005 1,689
50 Lignins: Natural polymers from oxidative coupling of 4-hydroxyphenyl- propanoids John Ralph, Knut Lundquist, Gösta Brunow et al. · Phytochemistry Reviews 2004 1,668

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for a field when OpenAlex files it under one of the field's topics; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.