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Institution · Allen Institute

Most cited papers from Allen Institute

Allen Institute

What are the most cited papers from Allen Institute?

The most cited paper from Allen Institute is "The diagnosis of dementia due to Alzheimer's disease: Recommendations from the National Institute on Aging‐Alzheimer's Association workgroups on diagnostic guidelines for Alzheimer's disease" (Guy M. McKhann, David S. Knopman, Howard Mark Chertkow et al., 2011), with 19,132 citations. Next come "Analysis of protein-coding genetic variation in 60,706 humans" (10,439) and "Biological insights from 108 schizophrenia-associated genetic loci" (8,181).

Showing 50 of 60 papers. Every paper with more than 1,537 citations is listed.

Most cited papers, sortable by citations and release date
#Paper
1 The diagnosis of dementia due to Alzheimer's disease: Recommendations from the National Institute on Aging‐Alzheimer's Association workgroups on diagnostic guidelines for Alzheimer's disease Guy M. McKhann, David S. Knopman, Howard Mark Chertkow et al. · Alzheimer s & Dementia Open access 22 Apr 2011 19,132
2 Analysis of protein-coding genetic variation in 60,706 humans Monkol Lek et al. · Nature Open access Aug 2016 10,439
3 Biological insights from 108 schizophrenia-associated genetic loci Stephan Ripke et al. · Nature Open access297 authors Jul 2014 8,181
4 mTOR Signaling in Growth, Metabolism, and Disease Robert A. Saxton, David M. Sabatini · Cell Open access Mar 2017 7,763
5 A robust and high-throughput Cre reporting and characterization system for the whole mouse brain Linda Madisen, Theresa A. Zwingman, Susan M. Sunkin et al. · Nature Neuroscience Open access 20 Dec 2009 7,606
6 Randomized Assessment of Rapid Endovascular Treatment of Ischemic Stroke Mayank Goyal et al. · New England Journal of Medicine Open access 11 Feb 2015 6,122
7 Genome-wide atlas of gene expression in the adult mouse brain Ed S. Lein et al. · Nature 108 authors 6 Dec 2006 6,052
8 Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Daniel J. Klionsky et al. · Autophagy Open access2,467 authors 2 Jan 2016 6,023
9 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Ewan Birney et al. · Nature Open access312 authors Jun 2007 5,310
10 The origin of extracellular fields and currents — EEG, ECoG, LFP and spikes György Buzsáki, Costas A. Anastassiou, Christof Koch · Nature reviews. Neuroscience ReviewOpen access 18 May 2012 4,557
11 Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 David Allen Barbie et al. · Nature Open access 21 Oct 2009 4,303
12 XNOR-Net: ImageNet Classification Using Binary Convolutional Neural Networks Mohammad Rastegari, Vicente Ordóñez, Joseph Redmon et al. · Lecture notes in computer science Conference paper 2016 4,203
13 An anatomically comprehensive atlas of the adult human brain transcriptome Michael Hawrylycz et al. · Nature Open access Sep 2012 3,404
14 You Only Look Once: Unified, Real-Time Object Detection Joseph Redmon, Santosh Divvala, Ross Girshick et al. Conference paperOpen access Jun 2016 3,266
15 A mesoscale connectome of the mouse brain Seung Wook Oh et al. · Nature Open access Apr 2014 2,952
16 Mapping genomic loci implicates genes and synaptic biology in schizophrenia Vassily Vladimirovich Trubetskoy et al. · Nature Open access613 authors 8 Apr 2022 2,894
17 mTOR at the nexus of nutrition, growth, ageing and disease Grace Y. Liu, David M. Sabatini · Nature Reviews Molecular Cell Biology ReviewOpen access 14 Jan 2020 2,873
18 Identification of common genetic risk variants for autism spectrum disorder Jakob Grove et al. · Nature Genetics Open access 25 Feb 2019 2,721
19 New insights into the genetic etiology of Alzheimer’s disease and related dementias Céline Bellenguez et al. · Nature Genetics Open access1,266 authors Apr 2022 2,608
20 Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism F. Kyle Satterstrom et al. · Cell Open access190 authors 23 Jan 2020 2,534
21 Cancer Cell Metabolism: Warburg and Beyond Peggy P. Hsu, David M. Sabatini · Cell Open access Sep 2008 2,529
22 Ragulator-Rag Complex Targets mTORC1 to the Lysosomal Surface and Is Necessary for Its Activation by Amino Acids Yasemin Sancak, Liron Bar‐Peled, Roberto Zoncu et al. · Cell Open access Apr 2010 2,505
23 The complete genome sequence of a Neanderthal from the Altai Mountains Kay Prüfer et al. · Nature Open access 18 Dec 2013 2,458
24 Fully integrated silicon probes for high-density recording of neural activity James Jaeyoon Jun et al. · Nature Open access 7 Nov 2017 2,453
25 The Human Cell Atlas Aviv Regev et al. · eLife Open access 5 Dec 2017 2,441
26 Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution J-Donald Tournier, Fernando Calamante, Alan Connelly · NeuroImage 22 Feb 2007 2,358
27 Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder Ditte Demontis et al. · Nature Genetics Open access 23 Nov 2018 2,356
28 CellProfiler 4: improvements in speed, utility and usability David R. Stirling, Madison J. Swain-Bowden, Alice M. Lucas et al. · BMC Bioinformatics Open access 10 Sep 2021 2,303
29 Definitions, methods, and applications in interpretable machine learning William J. Murdoch, Chandan Singh, Karl Kumbier et al. · Proceedings of the National Academy of Sciences Open access 16 Oct 2019 2,179
30 CellProfiler 3.0: Next-generation image processing for biology Claire McQuin, Allen Goodman, Vasiliy S. Chernyshev et al. · PLoS Biology Open access 3 Jul 2018 2,156
31 A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response Maite Huarte, Mitchell Guttman, David M. Feldser et al. · Cell Open access Aug 2010 2,113
32 Reduced Number of Hypocretin Neurons in Human Narcolepsy Thomas C. Thannickal, Robert Y. Moore, Robert Nienhuis et al. · Neuron Open access Sep 2000 2,110
33 Microglia states and nomenclature: A field at its crossroads Rosa Chiara Paolicelli et al. · Neuron Open access Nov 2022 2,047
34 Activation of a Metabolic Gene Regulatory Network Downstream of mTOR Complex 1 Katrin Düvel, Jessica L. Yecies, Suchithra Menon et al. · Molecular Cell Open access Jul 2010 2,040
35 Shared and distinct transcriptomic cell types across neocortical areas Bosiljka Tasic et al. · Nature Open access 25 Oct 2018 2,028
36 Conserved cell types with divergent features in human versus mouse cortex Rebecca D. Hodge et al. · Nature Open access 21 Aug 2019 2,001
37 Adult mouse cortical cell taxonomy revealed by single cell transcriptomics Bosiljka Tasic et al. · Nature Neuroscience Open access 4 Jan 2016 1,995
38 A lysosome‐to‐nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB Carmine Settembre, Roberto Zoncu, Diego Luis Medina et al. · The EMBO Journal Open access 17 Feb 2012 1,988
39 The brain reward circuitry in mood disorders Scott J. Russo, Eric J. Nestler · Nature reviews. Neuroscience ReviewOpen access 14 Aug 2013 1,926
40 Functional organization of the hippocampal longitudinal axis Bryan Andrew Strange, Menno P. Witter, Ed S. Lein et al. · Nature reviews. Neuroscience ReviewOpen access 19 Sep 2014 1,855
41 Patterns and rates of exonic de novo mutations in autism spectrum disorders Benjamin M. Neale et al. · Nature Open access 3 Apr 2012 1,825
42 Identification and characterization of essential genes in the human genome Timothy Cragin Wang, Kıvanç Birsoy, Nicholas W. Hughes et al. · Science Open access 15 Oct 2015 1,817
43 Integrated information theory: from consciousness to its physical substrate Giulio Tononi, Mélanie Boly, Marcello Massimini et al. · Nature reviews. Neuroscience Review 26 May 2016 1,815
44 Visualization of Aβ42(43) and Aβ40 in senile plaques with end-specific Aβ monoclonals: Evidence that an initially deposited species is Aβ42(43) Takeshi Iwatsubo, Asano Odaka, Nobuhiro Suzuki et al. · Neuron Jul 1994 1,788
45 Functional genomics reveal that the serine synthesis pathway is essential in breast cancer Richard Possemato et al. · Nature Open access 14 Jul 2011 1,755
46 De novo mutations in schizophrenia implicate synaptic networks Menachem Fromer et al. · Nature Open access 22 Jan 2014 1,727
47 Neural correlates of consciousness: progress and problems Christof Koch, Marcello Massimini, Mélanie Boly et al. · Nature reviews. Neuroscience Review 20 Apr 2016 1,689
48 Molecular definitions of autophagy and related processes Lorenzo Galluzzi et al. · The EMBO Journal Open access 8 Jun 2017 1,670
49 Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture Anca M. Pașca, Steven A. Sloan, Laura E. Clarke et al. · Nature Methods Open access 25 May 2015 1,669
50 mTORC1 Senses Lysosomal Amino Acids Through an Inside-Out Mechanism That Requires the Vacuolar H + -ATPase Roberto Zoncu, Liron Bar‐Peled, Alejo Efeyan et al. · Science Open access 3 Nov 2011 1,655

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.