Institution · BioInfoBank Institute
Most cited papers from BioInfoBank Institute
What are the most cited papers from BioInfoBank Institute?
The most cited paper from BioInfoBank Institute is "The Phaeodactylum genome reveals the evolutionary history of diatom genomes" (Chris Bowler et al., 2008), with 1,712 citations. Next come "3D-Jury: a simple approach to improve protein structure predictions" (728) and "Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity" (324).
Showing 50 of 60 papers. Every paper with more than 31 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | The Phaeodactylum genome reveals the evolutionary history of diatom genomes Chris Bowler et al. · Nature | 15 Oct 2008 | 1,712 |
| 2 | 3D-Jury: a simple approach to improve protein structure predictions Krzysztof Ginalski, Arne Elofsson, Daniel Fischer et al. · Bioinformatics | 21 May 2003 | 728 |
| 3 | Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity Tim Rand, Krzysztof Ginalski, Nick V. Grishin et al. · Proceedings of the National Academy of Sciences | 27 Sep 2004 | 324 |
| 4 | XtalPred: a web server for prediction of protein crystallizability Lukasz Slabinski, Lukasz Jaroszewski, Leszek Rychlewski et al. · Bioinformatics | 5 Oct 2007 | 303 |
| 5 | Alphaherpesvirinae and Gammaherpesvirinae glycoprotein L and CMV UL130 originate from chemokines Maja Małkowska, Katarzyna Kokoszyńska, Magdalena Dymecka et al. · Virology Journal | 2 Jan 2013 | 246 |
| 6 | Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human Krzysztof Kuchta, Łukasz Kniżewski, Lucjan Stanislaw Wyrwicz et al. · Nucleic Acids Research | 15 Oct 2009 | 203 |
| 7 | CAFASP2: The second critical assessment of fully automated structure prediction methods Daniel Fischer, Arne Elofsson, Leszek Rychlewski et al. · Proteins Structure Function and Bioinformatics | 2001 | 199 |
| 8 | The challenge of protein structure determination—lessons from structural genomics Lukasz Slabinski, Lukasz Jaroszewski, Ana P. C. Rodrigues et al. · Protein Science | 25 Oct 2007 | 164 |
| 9 | Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440 José Ignacio Jiménez, Ángeles Canales, Jesús Jiménez‐Barbero et al. · Proceedings of the National Academy of Sciences | 4 Aug 2008 | 155 |
| 10 | mRNA Cap-1 Methyltransferase in the SARS Genome Marcin von Grotthuss, Lucjan Stanislaw Wyrwicz, Leszek Rychlewski · Cell | Jun 2003 | 141 |
| 11 | ORFeus: detection of distant homology using sequence profiles and predicted secondary structure Krzysztof Ginalski · Nucleic Acids Research | 25 Jun 2003 | 130 |
| 12 | Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine Marcin Nowosielski, Marcin Hoffmann, Lucjan Stanislaw Wyrwicz et al. · Journal of Chemical Information and Modeling | 13 Jan 2011 | 126 |
| 13 | Halogenated benzimidazoles and benzotriazoles as inhibitors of the NTPase/helicase activities of hepatitis C and related viruses Peter Borowski, Johanna Deinert, Sarah Schalinski et al. · European Journal of Biochemistry | Apr 2003 | 126 |
| 14 | Practical lessons from protein structure prediction Krzysztof Ginalski · Nucleic Acids Research | 23 Mar 2005 | 125 |
| 15 | Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2′-O-methyltransferases Marcin Feder, Jakub Paś, Lucjan Stanislaw Wyrwicz et al. · Gene | 2003 | 113 |
| 16 | Assessing Different Classification Methods for Virtual Screening Dariusz M. Plewczynski, Stéphane A. H. Spieser, Uwe Koch · Journal of Chemical Information and Modeling | 27 Apr 2006 | 112 |
| 17 | LiveBench‐8: The large‐scale, continuous assessment of automated protein structure prediction Leszek Rychlewski, Daniel Fischer · Protein Science | 19 Dec 2004 | 104 |
| 18 | VoteDock: Consensus docking method for prediction of protein–ligand interactions Dariusz M. Plewczynski, Michał Łaźniewski, Marcin von Grotthuss et al. · Journal of Computational Chemistry | Sep 2010 | 100 |
| 19 | CAFASP3: The third critical assessment of fully automated structure prediction methods Daniel Fischer, Leszek Rychlewski, Roland L. Dunbrack et al. · Proteins Structure Function and Bioinformatics | 2003 | 95 |
| 20 | Detecting distant homology with Meta-BASIC Krzysztof Ginalski, Marcin von Grotthuss, Nick V. Grishin et al. · Nucleic Acids Research | Jul 2004 | 95 |
| 21 | LiveBench-2: Large-scale automated evaluation of protein structure prediction servers Janusz Marek Bujnicki, Arne Elofsson, Daniel Fischer et al. · Proteins Structure Function and Bioinformatics | 2001 | 89 |
| 22 | Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches Łukasz Kniżewski, Lisa N. Kinch, Nick V. Grishin et al. · BMC Structural Biology | 20 Jun 2007 | 81 |
| 23 | FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases Krzysztof Kuchta, Anna Muszewska, Łukasz Kniżewski et al. · Nucleic Acids Research | 7 Apr 2016 | 80 |
| 24 | Target Specificity Analysis of the Abl Kinase using Peptide Microarray Data Leszek Rychlewski, Maik Kschischo, Liying Dong et al. · Journal of Molecular Biology | 8 Jan 2004 | 79 |
| 25 | Expanding the set of rhodococcal Baeyer–Villiger monooxygenases by high-throughput cloning, expression and substrate screening Anette Riebel, Hanna M. Dudek, Gonzalo de Gonzalo et al. · Applied Microbiology and Biotechnology | 4 Jan 2012 | 76 |
| 26 | Cooperative binding of the hnRNP K three KH domains to mRNA targets Agnieszka Paziewska, Lucjan Stanislaw Wyrwicz, Janusz Marek Bujnicki et al. · FEBS Letters | 13 Oct 2004 | 75 |
| 27 | AutoMotif server: prediction of single residue post-translational modifications in proteins Dariusz M. Plewczynski, Andrzej Tkacz, Lucjan Stanislaw Wyrwicz et al. · Computer applications in the biosciences | 22 Feb 2005 | 72 |
| 28 | Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment Krzysztof Ginalski, Leszek Rychlewski · Proteins Structure Function and Bioinformatics | 2003 | 69 |
| 29 | Characterization of hnRNP K Protein–RNA Interactions Karolina Klimek-Tomczak, Lucjan Stanislaw Wyrwicz, Sanjeev Jain et al. · Journal of Molecular Biology | 17 Aug 2004 | 69 |
| 30 | LiveBench-6: Large-scale automated evaluation of protein structure prediction servers Leszek Rychlewski, Daniel Fischer, Arne Elofsson · Proteins Structure Function and Bioinformatics | 2003 | 67 |
| 31 | Detection of reliable and unexpected protein fold predictions using 3D-Jury Krzysztof Ginalski · Nucleic Acids Research | 25 Jun 2003 | 66 |
| 32 | Modification by Homocysteine Thiolactone Affects Redox Status of Cytochrome c Joanna Perła‐Kaján, Łukasz Marczak, László Kaján et al. · Biochemistry | May 2007 | 64 |
| 33 | Anti‐HIV‐1 activity of 3‐deaza‐adenosine analogs Richard Keith Gordon, Krzysztof Ginalski, Witold Remigiusz Rudnicki et al. · European Journal of Biochemistry | 4 Aug 2003 | 63 |
| 34 | Heterogeneous Nuclear Ribonucleoprotein K Protein Associates with Multiple Mitochondrial Transcripts within the Organelle Jerzy Ostrowski, Lucjan Stanislaw Wyrwicz, Leszek Rychlewski et al. · Journal of Biological Chemistry | Feb 2002 | 62 |
| 35 | Identification of Herpes TATT-binding protein Lucjan Stanislaw Wyrwicz, Leszek Rychlewski · Antiviral Research | 29 Mar 2007 | 62 |
| 36 | Application of 3D-Jury, GRDB, and Verify3D in fold recognition Marcin von Grotthuss, Jakub Paś, Lucjan Stanislaw Wyrwicz et al. · Proteins Structure Function and Bioinformatics | 2003 | 54 |
| 37 | Ligand.Info Small-Molecule Meta-Database Marcin von Grotthuss, Grzegorz Koczyk, Jakub Paś et al. · Combinatorial Chemistry & High Throughput Screening | Dec 2004 | 53 |
| 38 | One-Time Computable Self-erasing Functions Stefan Dziembowski, Tomasz Kazana, Daniel Wichs · Lecture notes in computer science | 2011 | 53 |
| 39 | Mapping the Substrate Binding Site of Phenylacetone Monooxygenase from Thermobifida fusca by Mutational Analysis Hanna M. Dudek, Gonzalo de Gonzalo, Daniel E. Torres Pazmiño et al. · Applied and Environmental Microbiology | 4 Jul 2011 | 52 |
| 40 | Analysis of structure and function of tenascin-C Jakub Paś, Eliza Wyszko, Katarzyna Rolle et al. · The International Journal of Biochemistry & Cell Biology | 2006 | 52 |
| 41 | DFT study on hydroxy acid–lactone interconversion of statins: the case of atorvastatin Marcin Hoffmann, Marcin Nowosielski · Organic & Biomolecular Chemistry | 2008 | 50 |
| 42 | Novel Physiological Modulation of the Pu Promoter of TOL Plasmid Emanuela Rescalli, Silvia Saini, Cristina Bartocci et al. · Journal of Biological Chemistry | Feb 2004 | 50 |
| 43 | Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda2 protein Janusz Marek Bujnicki, Leszek Rychlewski · Genome biology | 23 Aug 2001 | 49 |
| 44 | Squalene monooxygenase – a target for hypercholesterolemic therapy Agnieszka Belter, Mirosława Skupińska, Małgorzata Giel-Pietraszuk et al. · Biological Chemistry | 4 Nov 2011 | 47 |
| 45 | Human Herpesvirus 1 UL24 Gene Encodes a Potential PD-(D/E)XK Endonuclease Łukasz Kniżewski, Lisa N. Kinch, Nick V. Grishin et al. · Journal of Virology | 11 Feb 2006 | 44 |
| 46 | Unexpected domain composition of MACC1 links MET signaling and apoptosis. Katarzyna Kokoszyńska, Jacek Kryński, Leszek Rychlewski et al. · Acta Biochimica Polonica | 4 Jun 2009 | 44 |
| 47 | The fold recognition of CP2 transcription factors gives new insights into the function and evolution of tumor suppressor protein p53 Katarzyna Kokoszyńska, Jerzy Ostrowski, Leszek Rychlewski et al. · Cell Cycle | 15 Sep 2008 | 43 |
| 48 | Target Specific Compound Identification Using a Support Vector Machine Dariusz M. Plewczynski, Marcin von Grotthuss, Stéphane A. H. Spieser et al. · Combinatorial Chemistry & High Throughput Screening | Mar 2007 | 41 |
| 49 | Evaluation of 3D-Jury on CASP7 models László Kaján, Leszek Rychlewski · BMC Bioinformatics | 21 Aug 2007 | 41 |
| 50 | BOF: a novel family of bacterial OB‐fold proteins Krzysztof Ginalski, Lisa N. Kinch, Leszek Rychlewski et al. · FEBS Letters | 12 May 2004 | 40 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.