Most cited papers from Genedata (Switzerland)

Genedata (Switzerland)

What are the most cited papers from Genedata (Switzerland)?

The most cited paper from Genedata (Switzerland) is "The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models" (Leming M. Shi et al., 2010), with 922 citations. Next come "HER2 screening data from ToGA: targeting HER2 in gastric and gastroesophageal junction cancer" (621) and "A new non-linear normalization method for reducing variability in DNA microarray experiments" (536).

Published TypeFieldAccessAuthorsCitations

Showing 50 of 61 papers. Every paper with more than 46 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models Leming M. Shi et al. · Nature Biotechnology Open access201 authors	30 Jul 2010	922
2	HER2 screening data from ToGA: targeting HER2 in gastric and gastroesophageal junction cancer Eric Van Cutsem, Yung‐Jue Bang, Feng-yi Feng et al. · Gastric Cancer Open access	19 Jul 2014	621
3	A new non-linear normalization method for reducing variability in DNA microarray experiments Christopher Thomas Workman, Lars Juhl Jensen, Hanne Østergaard Jarmer et al. · Genome biology Open access	30 Aug 2002	536
4	DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro Marcha C. T. Verheijen, Matthias Lienhard, Yannick Schrooders et al. · Scientific Reports Open access	15 Mar 2019	412
5	The genome sequence of the extreme thermophile Thermus thermophilus Anke Henne, Holger Brüggemann, Carsten Raasch et al. · Nature Biotechnology Open access	4 Apr 2004	392
6	The exposome in practice: Design of the EXPOsOMICS project Paolo Vineis, Marc Chadeau‐Hyam, Hans Gmuender et al. · International Journal of Hygiene and Environmental Health Open access	22 Aug 2016	326
7	Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints Peter Berndt, Uwe Hobohm, Hanno Langen · Electrophoresis	Dec 1999	254
8	Prediction of a carcinogenic potential of rat hepatocarcinogens using toxicogenomics analysis of short-term in vivo studies Heidrun C. Ellinger-Ziegelbauer, Hans Gmuender, Arnd Bandenburg et al. · Mutation research. Fundamental and molecular mechanisms of mutagenesis	6 Jul 2007	220
9	snakePipes: facilitating flexible, scalable and integrative epigenomic analysis Vivek Bhardwaj, Steffen Heyne, Katarzyna O. Sikora et al. · Bioinformatics Open access	23 May 2019	209
10	Cumulative Burden of Colorectal Cancer–Associated Genetic Variants Is More Strongly Associated With Early-Onset vs Late-Onset Cancer Alexi N. Archambault et al. · Gastroenterology Open access134 authors	19 Dec 2019	200
11	Novel Common Genetic Susceptibility Loci for Colorectal Cancer Stephanie L. Schmit et al. · JNCI Journal of the National Cancer Institute Open access183 authors	30 Apr 2018	193
12	The potential of circulating tumor DNA methylation analysis for the early detection and management of ovarian cancer Martin Widschwendter, Michal Zikán, Benjamin Wahl et al. · Genome Medicine Open access	Dec 2017	181
13	Freiburg RNA tools: a central online resource for RNA-focused research and teaching Martin Raden et al. · Nucleic Acids Research Open access	18 May 2018	179
14	Biomarker analysis of the NeoSphere study: pertuzumab, trastuzumab, and docetaxel versus trastuzumab plus docetaxel, pertuzumab plus trastuzumab, or pertuzumab plus docetaxel for the neoadjuvant treatment of HER2-positive breast cancer Giampaolo Bianchini, Astrid Christina Kiermaier, Giulia Bianchi et al. · Breast Cancer Research Open access	9 Feb 2017	131
15	CDNA microarray gene expression analysis of B-cell chronic lymphocytic leukemia proposes potential new prognostic markers involved in lymphocyte trafficking Christian Stratowa, Gerald L�ffler, Peter Lichter et al. · International Journal of Cancer Open access	2001	120
16	Transcriptional Profiling of the Heart Reveals Chamber-Specific Gene Expression Patterns Raymond Tabibiazar, Roger A. Wagner, Arnold Liao et al. · Circulation Research	28 Oct 2003	118
17	Complete loss of H3K9 methylation dissolves mouse heterochromatin organization Thomas Montavon, Nicholas Shukeir, Galina A. Erikson et al. · Nature Communications Open access	16 Jul 2021	117
18	Performance of Novel Kidney Biomarkers in Preclinical Toxicity Studies Dana Hoffmann, Melanie Adler, Vishal S. Vaidya et al. · Toxicological Sciences Open access	29 Jan 2010	114
19	Genomic organization of eukaryotic tRNAs Clara Isabel Bermúdez-Santana, Camille Stephan‐Otto Attolini, Toralf Kirsten et al. · BMC Genomics Open access	28 Apr 2010	110
20	Discovering the Mechanism of Action of Novel Antibacterial Agents through Transcriptional Profiling of Conditional Mutants Christoph Freiberg, H.-P. Fischer, Nina A. Brunner · Antimicrobial Agents and Chemotherapy Open access	26 Jan 2005	108
21	Perturbation of metabolic pathways mediates the association of air pollutants with asthma and cardiovascular diseases Ayoung Jeong et al. · Environment International Open access	7 Jul 2018	106
22	DNA methylation markers for early detection of women’s cancer: promise and challenges Timo Wittenberger, Sara H. Sleigh, Daniel Reisel et al. · Epigenomics Open access	Jun 2014	94
23	Complementary middle‐down and intact monoclonal antibody proteoform characterization by capillary zone electrophoresis – mass spectrometry Arseniy M. Belov, Li Zang, Roberto Sebastiano et al. · Electrophoresis Open access	11 May 2018	88
24	P ro M o T: modular modeling for systems biology Sebastian Mirschel, K. Steinmetz, M. Rempel et al. · Bioinformatics Open access	15 Jan 2009	88
25	Evaluating the predictive value of biomarkers for efficacy outcomes in response to pertuzumab- and trastuzumab-based therapy: an exploratory analysis of the TRYPHAENA study Andreas Schneeweiß, Stephen Chia, Roberto Hegg et al. · Breast Cancer Research Open access	8 Jul 2014	88
26	Differential Gene Regulation by Epstein-Barr Virus Type 1 and Type 2 EBNA2 Walter Lucchesi, Gareth Brady, Oliver Dittrich‐Breiholz et al. · Journal of Virology Open access	15 May 2008	83
27	Design, synthesis, and structure–activity relationship studies of new phenolic DNA gyrase inhibitors Thomas Lübbers, Peter Angehrn, Hans Gmünder et al. · Bioorganic & Medicinal Chemistry Letters	23 Dec 2006	83
28	Viral Profiling Identifies Multiple Subtypes of Kaposi’s Sarcoma Mina C. Hosseinipour, Kristen M. Sweet, Jie Xiong et al. · mBio Open access	24 Sep 2014	81
29	A Phase I Pharmacokinetic and Biological Correlative Study of Oblimersen Sodium (Genasense, G3139), an Antisense Oligonucleotide to the Bcl-2 mRNA, and of Docetaxel in Patients with Hormone-Refractory Prostate Cancer Anthony W. Tolcher, John G. Kuhn, Garry H. Schwartz et al. · Clinical Cancer Research	Aug 2004	81
30	Factors affecting the 27K DNA methylation pattern in asthmatic and healthy children from locations with various environments Andrea Rössnerová, Elena Tulupová, Nana Tabashidze et al. · Mutation research. Fundamental and molecular mechanisms of mutagenesis	2013	81
31	Blood cell gene expression profiling in rheumatoid arthritis Lone Frier Bovin, Klaus Rieneck, Christopher Thomas Workman et al. · Immunology Letters	26 Apr 2004	79
32	EU Framework 6 Project: Predictive Toxicology (PredTox)—overview and outcome Laura Suter‐Dick, Susanne Schroeder, Kirstin Meyer et al. · Toxicology and Applied Pharmacology	17 Oct 2010	77
33	Gene alteration and precursor and mature microRNA transcription changes contribute to the miRNA signature of primary effusion lymphoma Andrea J. O’Hara, Wolfgang Vahrson, Dirk P. Dittmer · Blood Open access	14 Dec 2007	77
34	Dynamic response of plant genome to ultraviolet radiation and other genotoxic stresses Jean Molinier, Edward J. Oakeley, Olivier Niederhauser et al. · Mutation research. Fundamental and molecular mechanisms of mutagenesis	4 Mar 2005	77
35	Dynamic regulation of BDNF and NT-3 expression during visual system development Edward S. Lein, Andreas Höhn, Carla J. Shatz · The Journal of Comparative Neurology	24 Apr 2000	74
36	Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination Maria Krishna de Guzman, Sabiha Parween, Vito M. Butardo et al. · Scientific Reports Open access	13 Jul 2017	73
37	A phase I trial of a Bcl-2 antisense (G3139) and weekly docetaxel in patients with advanced breast cancer and other solid tumors John Lindsay Marshall, Huanwen Alvin Chen, Dongxiao Yang et al. · Annals of Oncology Open access	26 Jul 2004	72
38	Repeatability of and Relationship between Potential COPD Biomarkers in Bronchoalveolar Lavage, Bronchial Biopsies, Serum, and Induced Sputum Stefan Röpcke, Olaf Holz, Gereon Lauer et al. · PLoS ONE Open access	4 Oct 2012	70
39	Methylation patterns in serum DNA for early identification of disseminated breast cancer Martin Widschwendter, Iona Evans, Allison Jones et al. · Genome Medicine Open access	Dec 2017	67
40	Identification of Antibiotic Stress-Inducible Promoters: A Systematic Approach to Novel Pathway-Specific Reporter Assays for Antibacterial Drug Discovery Hans Fischer, Nina A. Brunner, Bernd Wieland et al. · Genome Research Open access	2004	67
41	High‐performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics Jacques Colinge, Alexandre Masselot, Isabelle Cusin et al. · PROTEOMICS Open access	7 Jun 2004	67
42	Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes Titus Sparna, Julia Rétey, Kathrin Schmich et al. · BMC Genomics Open access	7 Apr 2010	64
43	Toxicogenomic Profiles in Relation to Maternal Immunotoxic Exposure and Immune Functionality in Newborns Kevin Hochstenbach, Danitsja M. van Leeuwen, Hans Gmuender et al. · Toxicological Sciences Open access	27 Jun 2012	63
44	Human Embryonic Stem Cell Derived Hepatocyte-Like Cells as a Tool for In Vitro Hazard Assessment of Chemical Carcinogenicity Reha Yildirimman, Gabriella Brolén, Mireia Vilardell et al. · Toxicological Sciences Open access	27 Aug 2011	62
45	Towards quantitative biology: Integration of biological information to elucidate disease pathways and to guide drug discovery Hans Fischer · Biotechnology annual review Book chapter	2005	61
46	The enhanced value of combining conventional and “omics” analyses in early assessment of drug-induced hepatobiliary injury Heidrun C. Ellinger-Ziegelbauer et al. · Toxicology and Applied Pharmacology	2 Oct 2010	60
47	Cellular Gene Expression That Correlates with EBER Expression in Epstein-Barr Virus-Infected Lymphoblastoid Cell Lines Goran Gregorovic, Rachel Bosshard, Claudio Elgueta Karstegl et al. · Journal of Virology Open access	20 Jan 2011	57
48	Altered Expression of Genes Involved in Hepatic Morphogenesis and Fibrogenesis Are Identified by Cdna Microarray Analysis in Biliary Atresia Limin Chen, Andrew Boris Goryachev, Jin Sun et al. · Hepatology	Sep 2003	55
49	Xenobiotic metabolism in differentiated human bronchial epithelial cells J.J.W.A. Boei, Sylvia Vermeulen, Binie Klein et al. · Archives of Toxicology Open access	13 Oct 2016	54
50	Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models Tatyana Y. Doktorova, Reha Yildirimman, Mathieu Vinken et al. · Carcinogenesis Open access	7 Feb 2013	54

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.