| 1 |
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system
Ramiro Vilchez‐Vargas, Robert Geffers, Maria Suarez Diez et al. · Environmental Microbiology
|
20 Apr 2012 |
148 |
| 2 |
Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems
Sarah M. Allard et al. · mSystems
Open access |
19 Oct 2020 |
107 |
| 3 |
Spirochaetes dominate the microbial community associated with the red coral Corallium rubrum on a broad geographic scale
Jeroen A. J. M. van de Water, Rémy Melkonian, Howard Junca et al. · Scientific Reports
Open access |
6 Jun 2016 |
106 |
| 4 |
Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species.
Caterina Guasp, Edward R. B. Moore, Jorge Lalucat et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
|
Jul 2000 |
94 |
| 5 |
Metabolic networks, microbial ecology and ‘omics’ technologies: towards understanding in situ biodegradation processes
Ramiro Vilchez‐Vargas, Howard Junca, Dietmar Helmut Pieper · Environmental Microbiology
Open access |
23 Sep 2010 |
94 |
| 6 |
Comparative Assessment of Mediterranean Gorgonian-Associated Microbial Communities Reveals Conserved Core and Locally Variant Bacteria
Jeroen A. J. M. van de Water, Rémy Melkonian, Christian Robert Voolstra et al. · Microbial Ecology
|
10 Oct 2016 |
87 |
| 7 |
A composite taxonomical and functional framework of microbiomes under acid mine drainage bioremediation systems
Marcela Villegas-Plazas, Janeth Sanabria, Howard Junca · Journal of Environmental Management
|
25 Sep 2019 |
70 |
| 8 |
The Intravenous Model of Murine Tuberculosis is Less Pathogenic Than the Aerogenic Model Owing to a More Rapid Induction of Systemic Immunity
Père-Joan Cardona, CARDONA, COOPER et al. · Scandinavian Journal of Immunology
Open access |
Apr 1999 |
63 |
| 9 |
Characterization of the gastrointestinal bacterial microbiome of farmed juvenile and adult white Cachama (Piaractus brachypomus)
Victor Castañeda-Monsalve, Howard Junca, Erika García-Bonilla et al. · Aquaculture
|
20 Jul 2019 |
51 |
| 10 |
Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth
Marcela Villegas-Plazas, Melissa L. Wos‐Oxley, Juan Armando Sánchez et al. · Microbial Ecology
Open access |
9 Nov 2018 |
51 |
| 11 |
Phylogenomics of Aerobic Bacterial Degradation of Aromatics
Danilo R. Pérez-Pantoja, Raúl A. Donoso, Howard Junca et al.
Book chapter |
2016 |
48 |
| 12 |
Microbial Toluene Removal in Hypoxic Model Constructed Wetlands Occurs Predominantly via the Ring Monooxygenation Pathway
Paula Martinez Lavanchy, Zhongbing Chen, Vanessa Lünsmann et al. · Applied and Environmental Microbiology
Open access |
7 Jul 2015 |
47 |
| 13 |
Dry and Rainy Seasons Significantly Alter the Gut Microbiome Composition and Reveal a Key Enterococcus sp. (Lactobacillales: Enterococcaceae) Core Component in Spodoptera frugiperda (Lepidoptera: Noctuidae) Corn Strain From Northwestern Colombia
Marlon Felipe Higuita Palacio, Olga Inés Montoya, C. I. Saldamando-Benjumea et al. · Journal of Insect Science
Open access |
21 Sep 2021 |
38 |
| 14 |
Effect of the extraction and purification of soil DNA and pooling of PCR amplification products on the description of bacterial and archaeal communities
Johan S. Sáenz, Fabio Roldán, Howard Junca et al. · Journal of Applied Microbiology
|
26 Feb 2019 |
38 |
| 15 |
Distinct composition signatures of archaeal and bacterial phylotypes in the Wanda Glacier forefield, Antarctic Peninsula
Igor Stelmach Pessi, César Osorio-Forero, Eric J. C. Gálvez et al. · FEMS Microbiology Ecology
Open access |
5 Dec 2014 |
38 |
| 16 |
Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome
Rafael José Vivero, Marcela Villegas-Plazas, Gloria Cadavid-Restrepo et al. · Scientific Reports
Open access |
28 Nov 2019 |
37 |
| 17 |
Establishment and characterization of a competitive exclusion bacterial culture derived from Nile tilapia (Oreochromis niloticus) gut microbiomes showing antibacterial activity against pathogenic Streptococcus agalactiae
Javier Fernando Melo‐Bolívar, Y. Ruíz, Michael E. Hume et al. · PLoS ONE
Open access |
3 May 2019 |
36 |
| 18 |
Theobroma cacao L. agricultural soils with natural low and high cadmium (Cd) in Santander (Colombia), contain a persistent shared bacterial composition shaped by multiple soil variables and bacterial isolates highly resistant to Cd concentrations
Pedro Felipe Feria Cáceres, Lucas Penagos Vélez, Howard Junca et al. · Current Research in Microbial Sciences
Open access |
30 Nov 2021 |
34 |
| 19 |
Genome Sequences of Alicycliphilus denitrificans Strains BC and K601 T
Margreet J. Oosterkamp, Teun Veuskens, Caroline M. Plugge et al. · Journal of Bacteriology
Open access |
8 Jul 2011 |
34 |
| 20 |
Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T
Margreet J. Oosterkamp et al. · PLoS ONE
Open access |
25 Jun 2013 |
34 |
| 21 |
Design and evaluation of synthetic bacterial consortia for optimized phenanthrene degradation through the integration of genomics and shotgun proteomics
Marianela Macchi, Sabrina Festa, Esteban Emanuel Nieto et al. · Biotechnology Reports
Open access |
10 Jan 2021 |
31 |
| 22 |
Competitive Exclusion Bacterial Culture Derived from the Gut Microbiome of Nile Tilapia (Oreochromis niloticus) as a Resource to Efficiently Recover Probiotic Strains: Taxonomic, Genomic, and Functional Proof of Concept
Javier Fernando Melo‐Bolívar, Y. Ruíz, Howard Junca et al. · Microorganisms
Open access |
8 Jul 2022 |
30 |
| 23 |
Enrichment and key features of a robust and consistent indigenous marine-cognate microbial consortium growing on oily bilge wastewaters
Melina Nisenbaum, Georgina Corti-Monzón, Marcela Villegas-Plazas et al. · Biodegradation
Open access |
Apr 2020 |
28 |
| 24 |
Africanized honey bees in Colombia exhibit high prevalence but low level of infestation of Varroa mites and low prevalence of pathogenic viruses
Víctor Manuel Tibatá, Andrés Sánchez, Evan C. Palmer‐Young et al. · PLoS ONE
Open access |
20 May 2021 |
25 |
| 25 |
Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation
Mónica A. Vásquez-Piñeros, Paula Martinez Lavanchy, Nico Jehmlich et al. · BMC Microbiology
Open access |
6 Sep 2018 |
23 |
| 26 |
Enrichment and characterization of a bilge microbial consortium with oil in water-emulsions breaking ability for oily wastewater treatment
Georgina Corti-Monzón, Melina Nisenbaum, Marcela Villegas-Plazas et al. · Biodegradation
Open access |
19 Mar 2020 |
22 |
| 27 |
Evaluation of dietary single probiotic isolates and probiotic multistrain consortia in growth performance, gut histology, gut microbiota, immune regulation, and infection resistance of Nile tilapia, Oreochromis niloticus, shows superior monostrain performance
Javier Fernando Melo‐Bolívar, Y. Ruíz, María Ximena Quintanilla‐Carvajal et al. · Fish & Shellfish Immunology
Open access |
7 Jul 2023 |
19 |
| 28 |
Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling
Álvaro M. Flórez, Miguel O. Suárez-Barrera, Gloria M. Morales et al. · Frontiers in Microbiology
Open access |
17 Oct 2018 |
18 |
| 29 |
Determination of the Africanized mitotypes in populations of honey bees (Apis melliferaL.) of Colombia
Víctor Manuel Tibatá, Edgar Arias, Miguel Corona et al. · Journal of Apicultural Research
|
8 Dec 2017 |
18 |
| 30 |
Antagonismo in vitro de Trichoderma harzianum Rifai sobre Fusarium solani (Mart.) Sacc., asociado a la marchitez en maracuyá
Carol Libeth Suárez Meza, Reinel José Fernández Barbosa, Nelson Valero et al. · DOAJ (DOAJ: Directory of Open Access Journals)
Open access |
Jul 2008 |
18 |
| 31 |
Microbiome analysis of Spodoptera frugiperda (Lepidoptera, Noctuidae) larvae exposed to Bacillus thuringiensis (Bt) endotoxins
Yuliana Castañeda-Molina, Sandra María Marulanda-Moreno, C. I. Saldamando-Benjumea et al. · PeerJ
Open access |
12 Sep 2023 |
14 |
| 32 |
A global survey reveals a divergent extradiol dioxygenase clade as a widespread complementary contributor to the biodegradation of mono- and polycyclic aromatic hydrocarbons
Maria V. Brennerova, Sofía G. Zavala-Meneses, Jiřina Josefiová et al. · Environmental Research
|
30 Aug 2021 |
13 |
| 33 |
Main features of DNA-based immunization vectors
Vasco Azevedo, Gabriela Levitus, Anderson Miyoshi et al. · Brazilian Journal of Medical and Biological Research
Open access |
Feb 1999 |
13 |
| 34 |
Metagenomic Analysis of Biochemical Passive Reactors During Acid Mine Drainage Bioremediation Reveals Key Co-selected Metabolic Functions
Marcela Villegas-Plazas, Janeth Sanabria, Ziv Arbeli et al. · Microbial Ecology
|
30 Sep 2021 |
12 |
| 35 |
Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida)
Erika García-Bonilla, Pedro F. B. Brandão, Thierry Pérez et al. · Microbial Ecology
|
15 May 2018 |
12 |
| 36 |
Caracterización de rizobacterias asociadas al cultivo del maíz en la producción de metabolitos del tipo AIA, sideróforos y ácido salicílico
Annia Hernández, Narovis Rives, Alberto Caballero et al. · Repositorio Institucional UN - Biblioteca Digital
Open access |
2004 |
10 |
| 37 |
Specialized microbiome of the cave-dwelling sponge Plakina kanaky (Porifera, Homoscleromorpha)
César Ruiz, Marcela Villegas-Plazas, Olivier P. Thomas et al. · FEMS Microbiology Ecology
|
13 Mar 2020 |
9 |
| 38 |
Primers: Bacterial Genes Encoding Enzymes for Aerobic Hydrocarbon Degradation
Alberto Scoma, Emma Hernandez‐Sanabria, Tim Lacoere et al. · Springer protocols handbooks/Springer protocols
Book chapter |
2015 |
9 |
| 39 |
Interaction and effects of temperature preference under a controlled environment on the diversity and abundance of the microbiome in Lutzomyia longipalpis (Diptera: Psychodidae)
Daniela Duque-Granda, Rafael José Vivero, Howard Junca et al. · Biotechnology Reports
Open access |
12 Sep 2024 |
8 |
| 40 |
Yeast and Bacterial Composition in Pot-Pollen Recovered from Meliponini in Colombia: Prospects for a Promising Biological Resource
Marcela Villegas-Plazas, Judith Figueroa-Ramírez, Carla Portillo et al.
Book chapter |
2018 |
8 |
| 41 |
Producción y formulación de prototipos de un biofertilizante a partir de bacterias nativas asociadas al cultivo de arroz (Oryza sativa)
Nubia Moreno-Sarmiento, Johanna Rojas Sierra · Repositorio Institucional UN - Biblioteca Digital
Open access |
2008 |
7 |
| 42 |
Oily Bilge Wastes Harbor a Set of Persistent Hydrocarbonoclastic Bacteria Accompanied by a Variable alkB Gene Composition in Marine Vessel Samples from Southwestern Atlantic Port of Mar del Plata, Argentina
Georgina Corti-Monzón, Melina Nisenbaum, Silvia R. Peressutti et al. · Water Air & Soil Pollution
|
Jul 2021 |
6 |
| 43 |
DNA secondary structure formation by DNA shuffling of the conserved domains of the Cry protein of Bacillus thuringiensis
Efrain H. Pinzon, DANIEL A. SIERRA, Miguel O. Suarez et al. · BMC Biophysics
Open access |
22 May 2017 |
6 |
| 44 |
Development of a genetic tool for functional screening of anti-malarial bioactive extracts in metagenomic libraries
Alvaro Monguí, Francy J. Pérez-Llanos, Márcio Massao Yamamoto et al. · Malaria Journal
Open access |
4 Jun 2015 |
6 |
| 45 |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae
Jeysson Sánchez-Suárez, Luis E. Díaz, Howard Junca et al. · Journal of Applied Microbiology
Open access |
12 Jul 2022 |
5 |
| 46 |
Thrips Microbiome Study in Commercial Avocado (Persea americana Mill.) from Northwest Colombian Andes (Antioquia, Colombia) Shows the Presence of Wolbachia, Ehrlichia, Enterobacter
Daniela Cano-Calle, Luisa Maria Montoya-Porras, Sebastian Ochoa-Giraldo et al. · Diversity
Open access |
4 Jul 2022 |
5 |
| 47 |
Molecular detection of Melissococcus plutonius assessed in Africanized honey bee populations (Apis mellifera) in three regions of Colombia
Víctor Manuel Tibatá, Howard Junca, Andrés Sánchez et al. · Journal of Apicultural Research
|
6 Mar 2018 |
5 |
| 48 |
Metagenomic profiling of the insect-specific virome in non-urban mosquitoes (Culicidae: Culicinae) from Colombia’s Northern inter-Andean valleys
Andrés M. Gómez-Palacio, Howard Junca, Rafael José Vivero et al. · PLoS ONE
Open access |
3 Sep 2025 |
4 |
| 49 |
Exploring the Diversity of Microbial Communities Associated with Two Anopheles Species During Dry Season in an Indigenous Community from the Colombian Amazon
Daniela Duque-Granda, Rafael José Vivero, Laura Alejandra González Ceballos et al. · Insects
Open access |
4 Mar 2025 |
4 |
| 50 |
Microbiome composition and autochthonous probiotics from contrasting probiosis/dysbiosis states in cobia (Rachycentron canadum) fish epitheliocystis
Marcela Villegas-Plazas, Luisa Villamil, María Angélica Martínez-Silva et al. · Access Microbiology
Open access |
10 Aug 2022 |
4 |