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Most cited papers from OpenBiome

OpenBiome

What are the most cited papers from OpenBiome?

The most cited paper from OpenBiome is "Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial" (Jasmohan Singh Bajaj, Zain Kassam, Andrew Fagan et al., 2017), with 638 citations. Next come "International consensus conference on stool banking for faecal microbiota transplantation in clinical practice" (510) and "A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research" (435).

Published TypeFieldAccessCitations

Showing 50 of 60 papers. Every paper with more than 25 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial Jasmohan Singh Bajaj, Zain Kassam, Andrew Fagan et al. · Hepatology Open access	6 Jun 2017	638
2	International consensus conference on stool banking for faecal microbiota transplantation in clinical practice Giovanni Cammarota et al. · Gut Open access	28 Sep 2019	510
3	A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research Mathilde Poyet et al. · Nature Medicine	Sep 2019	435
4	OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization Gustaf Ahdritz et al. · Nature Methods Open access	14 May 2024	331
5	Effects of Fecal Microbiota Transplantation With Oral Capsules in Obese Patients Jessica R. Allegretti, Zain Kassam, Benjamin Harvey Mullish et al. · Clinical Gastroenterology and Hepatology Open access	10 Jul 2019	319
6	Fecal Microbial Transplant Capsules Are Safe in Hepatic Encephalopathy: A Phase 1, Randomized, Placebo‐Controlled Trial Jasmohan Singh Bajaj, Nita H. Salzman, Chathur Acharya et al. · Hepatology Open access	May 2019	293
7	Transmission of human-associated microbiota along family and social networks Ilana Brito, Thomas Gurry, Shijie Zhao et al. · Nature Microbiology Open access	25 Mar 2019	269
8	Systematic Review and Meta-analysis Neeraj Narula, Zain Kassam, Yuhong Yuan et al. · Inflammatory Bowel Diseases ReviewOpen access	13 Sep 2017	215
9	Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry Colleen R. Kelly et al. · Gastroenterology Open access	Oct 2020	214
10	Fecal microbiota transplant in severe and severe-complicatedClostridium difficile: A promising treatment approach Monika Fischer, Brian W. Sipe, Yao‐Wen Cheng et al. · Gut Microbes Open access	21 Dec 2016	193
11	Faecal microbiota transplantation for diarrhoea-predominant irritable bowel syndrome: a double-blind, randomised, placebo-controlled trial Olga C. Aroniadis, Lawrence J. Brandt, Caterina Oneto et al. · The Lancet. Gastroenterology & hepatology	17 Jul 2019	159
12	Antibiotic‐Associated Disruption of Microbiota Composition and Function in Cirrhosis Is Restored by Fecal Transplant Jasmohan Singh Bajaj, Genta Kakiyama, Tor Savidge et al. · Hepatology	17 Apr 2018	145
13	Policy: How to regulate faecal transplants Mark B Smith, Colleen R. Kelly, Eric J. Alm · Nature	14 Feb 2014	143
14	Fecal microbiota transplantation for the treatment of recurrent and severe Clostridium difficile infection in solid organ transplant recipients: A multicenter experience Yao‐Wen Cheng et al. · American Journal of Transplantation Open access	7 Aug 2018	141
15	Donor Screening for Fecal Microbiota Transplantation Zain Kassam, Nancy E. Dubois, Bharat Ramakrishna et al. · New England Journal of Medicine	30 Oct 2019	130
16	Daily, oral FMT for long-term maintenance therapy in ulcerative colitis: results of a single-center, prospective, randomized pilot study Jessica Wood Crothers et al. · BMC Gastroenterology Open access	8 Jul 2021	126
17	The risk of inflammatory bowel disease flares after fecal microbiota transplantation: Systematic review and meta-analysis Taha Qazi, Thelina Amaratunga, Edward Larrabee Barnes et al. · Gut Microbes ReviewOpen access	19 Jul 2017	125
18	Diagnostic Accuracy of Neonatal Assessment for Gestational Age Determination: A Systematic Review Anne CC Lee, Pratik Bhikhubhai Panchal, Lian V. Folger et al. · PEDIATRICS Review	17 Nov 2017	116
19	Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis Vinita Elizabeth Jacob, Carl V. Crawford, Shirley Cohen‐Mekelburg et al. · Inflammatory Bowel Diseases Open access	26 Apr 2017	114
20	Fecal microbiota transplantation in HIV: A pilot placebo-controlled study Sergio Serrano Villar et al. · Nature Communications Open access	18 Feb 2021	97
21	Shiga Toxin–Producing Escherichia coli Transmission via Fecal Microbiota Transplant Caroline Zellmer, Mohamad Sater, Miriam H. Huntley et al. · Clinical Infectious Diseases	25 Sep 2020	94
22	Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations Nathaniel D. Chu, Mark B Smith, Allison R. Perrotta et al. · PLoS ONE Open access	26 Jan 2017	93
23	Gut microbial dysbiosis in individuals with Sjögren’s syndrome Roberto Méndez, Arjun Watane, Monika Farhangi et al. · Microbial Cell Factories Open access	15 Apr 2020	91
24	Clostridium difficile associated risk of death score ( CARDS ): a novel severity score to predict mortality among hospitalised patients with C. difficile infection Zahra Kassam, Camila Cribb Fabersunne, Michael B. H. Smith et al. · Alimentary Pharmacology & Therapeutics Open access	5 Feb 2016	76
25	Combined Endoscopic and Oral Fecal Microbiota Transplantation in Patients with Antibiotic-Dependent Pouchitis: Low Clinical Efficacy due to Low Donor Microbial Engraftment Hans H. Herfarth, Edward Larrabee Barnes, Millie D. Long et al. · Inflammatory Intestinal Diseases Open access	2019	75
26	Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile Liat S. Gutin, Yvette M. Piceno, Douglas W. Fadrosh et al. · United European Gastroenterology Journal Open access	20 Apr 2019	73
27	Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort Thomas Gurry, Paul H. Dannenberg, Samuel G. Finlayson et al. · Scientific Reports Open access	17 Aug 2018	69
28	Fecal Microbiota Transplantation Capsules with Targeted Colonic Versus Gastric Delivery in Recurrent Clostridium difficile Infection: A Comparative Cohort Analysis of High and Lose Dose Jessica R. Allegretti, Monika Fischer, Sashidhar Varma Sagi et al. · Digestive Diseases and Sciences	4 Dec 2018	67
29	The 5D framework: a clinical primer for fecal microbiota transplantation to treat Clostridium difficile infection Jessica R. Allegretti, Zain Kassam, Majdi Osman et al. · Gastrointestinal Endoscopy	3 Jun 2017	57
30	Ensuring the safe and effective FDA regulation of fecal microbiota transplantation Rachel E. Sachs, Carolyn A. Edelstein · Journal of Law and the Biosciences Open access	6 Jul 2015	57
31	Framework for rational donor selection in fecal microbiota transplant clinical trials Claire Duvallet, Caroline Zellmer, Pratik Bhikhubhai Panchal et al. · PLoS ONE Open access	10 Oct 2019	56
32	Serendipity in Refractory Celiac Disease: Full Recovery of Duodenal Villi and Clinical Symptoms after Fecal Microbiota Transfer Yvette H. van Beurden, Tom V. Gils, Nienke A. Van Gils et al. · Journal of Gastrointestinal and Liver Diseases Open access	Sep 2016	56
33	Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study Daniel Selvig, Yvette M. Piceno, Jonathan P. Terdiman et al. · Digestive Diseases and Sciences	13 Jul 2019	55
34	Stool Banking for Fecal Microbiota Transplantation: Methods and Operations at a Large Stool Bank Justin Chen, Amanda Zaman, Bharat Ramakrishna et al. · Frontiers in Cellular and Infection Microbiology Open access	15 Apr 2021	53
35	Inflammatory Bowel Disease Outcomes Following Fecal Microbiota Transplantation for Recurrent C. difficile Infection Jessica R. Allegretti et al. · Inflammatory Bowel Diseases Open access	6 Nov 2020	53
36	Scaling Safe Access to Fecal Microbiota Transplantation: Past, Present, and Future Pratik Bhikhubhai Panchal, Shrish Budree, Alex Scheeler et al. · Current Gastroenterology Reports	28 Mar 2018	52
37	Early Antibiotic Use After Fecal Microbiota Transplantation Increases Risk of Treatment Failure Jessica R. Allegretti, Dina H. Kao, Jessica Sitko et al. · Clinical Infectious Diseases Open access	Aug 2017	51
38	HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort Shantelle Claassen-Weitz, Sugnet Gardner‐Lubbe, Paul Nicol et al. · Scientific Reports Open access	22 Mar 2018	45
39	The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status Sarah M. Hird, Holly H. Ganz, Jonathan A. Eisen et al. · mSphere Open access	23 Oct 2018	44
40	The Current Landscape and Lessons from Fecal Microbiota Transplantation for Inflammatory Bowel Disease Jessica R. Allegretti, Lindsay M. Eysenbach, Najwa El‐Nachef et al. · Inflammatory Bowel Diseases	29 Aug 2017	44
41	Optimal screening and donor management in a public stool bank Abbas Kazerouni, James F Burgess, Laura J. Burns et al. · Microbiome Open access	Dec 2015	44
42	OpenBiome remains open to serve the medical community Mark B Smith, Zain Kassam, Carolyn A. Edelstein et al. · Nature Biotechnology Open access	Sep 2014	44
43	Effectiveness and Safety of Fecal Microbiota Transplantation for Clostridioides Difficile Infection: Results From a 5344-Patient Cohort Study Majdi Osman et al. · Gastroenterology Open access	7 Apr 2022	42
44	BN80927 Danièle Demarquay, Marion Huchet, Hélène M. Coulomb et al. · Cancer Research	15 Jul 2004	40
45	Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing Carter Hoffman, Nazema Y. Siddiqui, Ian Fields et al. · mSystems Open access	14 Sep 2021	39
46	Classifying Fecal Microbiota Transplantation Failure: An Observational Study Examining Timing and Characteristics of Fecal Microbiota Transplantation Failures Jessica R. Allegretti, Andrew S. Allegretti, Emmalee L. Phelps et al. · Clinical Gastroenterology and Hepatology	19 Nov 2017	33
47	Microbial approaches for targeting antibiotic‐resistant bacteria Wing Fei Wong, Marina Santiago · Microbial Biotechnology Open access	3 Aug 2017	33
48	Differences in Clinical Course, Genetics, and the Microbiome Between Familial and Sporadic Inflammatory Bowel Diseases Nienke Z. Borren, Grace M. Conway, John J. Garber et al. · Journal of Crohn s and Colitis Open access	13 Nov 2017	32
49	Evaluation of in ovo Bacillus spp. based probiotic administration on horizontal transmission of virulent Escherichia coli in neonatal broiler chickens Margarita A. Arreguin-Nava, Danielle B. Graham, Bishnu Adhikari et al. · Poultry Science Open access	23 Sep 2019	31
50	Altered brain structural connectivity in patients with longstanding gut inflammation is correlated with psychological symptoms and disease duration Joanna Turkiewicz, Ravi R. Bhatt, Hao Wang et al. · NeuroImage Clinical Open access	2021	30

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.