Institution · PanAmerican Bioinformatics Institute
Most cited papers from PanAmerican Bioinformatics Institute
What are the most cited papers from PanAmerican Bioinformatics Institute?
The most cited paper from PanAmerican Bioinformatics Institute is "On the presence and role of human gene-body DNA methylation" (Daudi Jjingo, Andrew B. Conley, Soojin V. Yi et al., 2012), with 552 citations. Next come "Genetic ancestry, admixture and health determinants in Latin America" (146) and "MIR retrotransposon sequences provide insulators to the human genome" (133).
Showing 50 of 60 papers. Every paper with more than 19 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | On the presence and role of human gene-body DNA methylation Daudi Jjingo, Andrew B. Conley, Soojin V. Yi et al. · Oncotarget | 30 Apr 2012 | 552 |
| 2 | Genetic ancestry, admixture and health determinants in Latin America Emily T. Norris, Lu Wang, Andrew B. Conley et al. · BMC Genomics | Dec 2018 | 146 |
| 3 | MIR retrotransposon sequences provide insulators to the human genome Jianrong Wang, Cristina Vicente‐García, Davide Seruggia et al. · Proceedings of the National Academy of Sciences | 27 Jul 2015 | 133 |
| 4 | Ancestry, admixture and fitness in Colombian genomes Lavanya Rishishwar, Andrew B. Conley, Charles H. Wigington et al. · Scientific Reports | 21 Jul 2015 | 115 |
| 5 | Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline John Christian Gaby, Lavanya Rishishwar, Lina C. Valderrama-Aguirre et al. · Applied and Environmental Microbiology | 27 Nov 2017 | 113 |
| 6 | Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community Christopher L. Hemme, Stefan J. Green, Lavanya Rishishwar et al. · mBio | 6 Apr 2016 | 109 |
| 7 | stringMLST: a fast k-mer based tool for multilocus sequence typing Anuj Kumar Gupta, I. King Jordan, Lavanya Rishishwar · Bioinformatics | 7 Sep 2016 | 99 |
| 8 | Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression Daudi Jjingo, Andrew B. Conley, Jianrong Wang et al. · Mobile DNA | 5 May 2014 | 91 |
| 9 | Benchmarking computational tools for polymorphic transposable element detection Lavanya Rishishwar, Leonardo Mariño‐Ramírez, I. King Jordan · Briefings in Bioinformatics | 14 Aug 2016 | 85 |
| 10 | Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities Joel E. Kostka, Stefan J. Green, Lavanya Rishishwar et al. · Journal of Bacteriology | 28 Jul 2012 | 83 |
| 11 | Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters Cristian V. Crisan, Aroon T. Chande, Kenneth C. Williams et al. · Genome biology | 12 Aug 2019 | 74 |
| 12 | Socioeconomic deprivation and genetic ancestry interact to modify type 2 diabetes ethnic disparities in the United Kingdom Shashwat Deepali Nagar, Anna María Nápoles, I. King Jordan et al. · EClinicalMedicine | 14 Jun 2021 | 73 |
| 13 | Transposable element polymorphisms recapitulate human evolution Lavanya Rishishwar, Carlos Eduardo Téllez Villa, I. King Jordan · Mobile DNA | 16 Nov 2015 | 73 |
| 14 | Implications of human evolution and admixture for mitochondrial replacement therapy Lavanya Rishishwar, I. King Jordan · BMC Genomics | 8 Feb 2017 | 66 |
| 15 | Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements Lu Wang, Lavanya Rishishwar, Leonardo Mariño‐Ramírez et al. · Nucleic Acids Research | 12 Dec 2016 | 66 |
| 16 | Human Retrotransposon Insertion Polymorphisms Are Associated with Health and Disease via Gene Regulatory Phenotypes Lu Wang, Emily T. Norris, I. King Jordan · Frontiers in Microbiology | Aug 2017 | 60 |
| 17 | The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction Gina A. Garzón-Martínez, Zhiguo Zhu, David Landsman et al. · BMC Genomics | 25 Apr 2012 | 58 |
| 18 | Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes Fabrício Ramon Lopes, Daudi Jjingo, Carlos R. M. da Silva et al. · PLoS ONE | 11 Nov 2013 | 58 |
| 19 | A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Chocó and Medellín Andrew B. Conley, Lavanya Rishishwar, Emily T. Norris et al. · G3 Genes Genomes Genetics | 30 Aug 2017 | 52 |
| 20 | An atlas of transposable element-derived alternative splicing in cancer Evan A. Clayton, Lavanya Rishishwar, Tzu-Chuan Huang et al. · Philosophical Transactions of the Royal Society B Biological Sciences | 10 Feb 2020 | 50 |
| 21 | Admixture-enabled selection for rapid adaptive evolution in the Americas Emily T. Norris, Lavanya Rishishwar, Aroon T. Chande et al. · Genome biology | 6 Feb 2020 | 48 |
| 22 | Development and Characterization of Microsatellite Markers for the Cape Gooseberry Physalis peruviana Jaime Simbaqueba, P Alberto Sánchez, Erika Sánchez-Betancourt et al. · PLoS ONE | 21 Oct 2011 | 48 |
| 23 | Population Pharmacogenomics for Precision Public Health in Colombia Shashwat Deepali Nagar, A. Melissa Moreno, Emily T. Norris et al. · Frontiers in Genetics | 22 Mar 2019 | 45 |
| 24 | Genome-wide prediction and analysis of human chromatin boundary elements Jianrong Wang, Victoria V. Lunyak, I. King Jordan · Nucleic Acids Research | 19 Sep 2011 | 45 |
| 25 | Epigenetic regulation of human cis -natural antisense transcripts Andrew B. Conley, I. King Jordan · Nucleic Acids Research | Feb 2012 | 44 |
| 26 | Fish corallivory on a pocilloporid reef and experimental coral responses to predation Maria M. Palacios, Carlos G. Muñoz, Fernando A. Zapata · Coral Reefs | 31 May 2014 | 44 |
| 27 | Evidence for positive selection on recent human transposable element insertions Lavanya Rishishwar, Lu Wang, Jianrong Wang et al. · Gene | 25 Jun 2018 | 41 |
| 28 | Identification of Immunity Related Genes to Study the Physalis peruviana – Fusarium oxysporum Pathosystem Felix E. Enciso-Rodríguez, Carolina González, Edwin A. Rodríguez et al. · PLoS ONE | 3 Jul 2013 | 40 |
| 29 | Rye: genetic ancestry inference at biobank scale Andrew B. Conley, Lavanya Rishishwar, Maria Ahmad et al. · Nucleic Acids Research | 24 Feb 2023 | 37 |
| 30 | Native American admixture recapitulates population-specific migration and settlement of the continental United States I. King Jordan, Lavanya Rishishwar, Andrew B. Conley · PLoS Genetics | 23 Sep 2019 | 37 |
| 31 | Genome Sequence-Based Discriminator for Vancomycin-Intermediate Staphylococcus aureus Lavanya Rishishwar, Robert A. Petit, Colleen S. Kraft et al. · Journal of Bacteriology | 20 Dec 2013 | 37 |
| 32 | BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets Jianrong Wang, Victoria V. Lunyak, I. King Jordan · Bioinformatics | 7 Jan 2013 | 37 |
| 33 | Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis Fabini D. Orata, Yue Xu, Lori M. Gladney et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 28 Jul 2016 | 36 |
| 34 | Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression Daudi Jjingo, Ahsan Huda, Gundapuneni Madhumati et al. · Genome Biology and Evolution | 2011 | 35 |
| 35 | Genetic ancestry and ethnic identity in Ecuador Shashwat Deepali Nagar, Andrew B. Conley, Aroon T. Chande et al. · Human Genetics and Genomics Advances | 20 Aug 2021 | 33 |
| 36 | Prediction of Transposable Element Derived Enhancers Using Chromatin Modification Profiles Ahsan Huda, Eishita Tyagi, Leonardo Mariño‐Ramírez et al. · PLoS ONE | 7 Nov 2011 | 32 |
| 37 | Population and clinical genetics of human transposable elements in the (post) genomic era Lavanya Rishishwar, Lu Wang, Evan A. Clayton et al. · Mobile Genetic Elements | 2 Jan 2017 | 31 |
| 38 | Patterns of Transposable Element Expression and Insertion in Cancer Evan A. Clayton, Lu Wang, Lavanya Rishishwar et al. · Frontiers in Molecular Biosciences | 15 Nov 2016 | 31 |
| 39 | Virulence and Immune Response Induced by Mycobacterium avium Complex Strains in a Model of Progressive Pulmonary Tuberculosis and Subcutaneous Infection in BALB/c Mice Mónica González-Pérez, Leonardo Mariño‐Ramírez, Carlos Parra-López et al. · Infection and Immunity | 20 Aug 2013 | 30 |
| 40 | The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia Aroon T. Chande, Shashwat Deepali Nagar, Lavanya Rishishwar et al. · Frontiers in Genetics | 17 Sep 2021 | 29 |
| 41 | Sliding Motility, Biofilm Formation, and Glycopeptidolipid Production inMycobacterium colombienseStrains Milena Maya-Hoyos, John Emerson Leguizamón, Leonardo Mariño‐Ramírez et al. · BioMed Research International | 2015 | 29 |
| 42 | Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields Luz K. Medina-Cordoba, Aroon T. Chande, Lavanya Rishishwar et al. · Scientific Reports | 28 Apr 2021 | 28 |
| 43 | Cell type-specific termination of transcription by transposable element sequences Andrew B. Conley, Irmgard Jordan · Mobile DNA | 2012 | 28 |
| 44 | In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex Lorena Novoa‐Aponte, Andrés León-Torres, Miyer F. Patiño-Ruiz et al. · BMC Structural Biology | 3 Oct 2012 | 28 |
| 45 | Ancestry effects on type 2 diabetes genetic risk inference in Hispanic/Latino populations Aroon T. Chande, Lavanya Rishishwar, Andrew B. Conley et al. · BMC Medical Genetics | Jun 2020 | 27 |
| 46 | Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain Aswathy Sebastian, Lavanya Rishishwar, Jianrong Wang et al. · Gene | 9 Apr 2013 | 27 |
| 47 | Transcriptional profiling of interleukin-2-primed human adipose derived mesenchymal stem cells revealed dramatic changes in stem cells response imposed by replicative senescence Ping Niu, Aibek Smagul, Lu Wang et al. · Oncotarget | 14 Jul 2015 | 27 |
| 48 | Population structure and pharmacogenomic risk stratification in the United States Shashwat Deepali Nagar, Andrew B. Conley, I. King Jordan · BMC Biology | 13 Oct 2020 | 24 |
| 49 | Whole-Genome Sequences of Staphylococcus aureus Isolates from Cystic Fibrosis Lung Infections Eryn E. Bernardy, Robert A. Petit, Abraham G Moller et al. · Microbiology Resource Announcements | 16 Jan 2019 | 23 |
| 50 | Transposable element activity, genome regulation and human health Lu Wang, I. King Jordan · Current Opinion in Genetics & Development | 2 Mar 2018 | 23 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.