Most cited papers from Quretec (Estonia)

Quretec (Estonia)

What are the most cited papers from Quretec (Estonia)?

The most cited paper from Quretec (Estonia) is "g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)" (Uku Raudvere, Liis Kolberg, Ivan Kuzmin et al., 2019), with 5,560 citations. Next come "Robust rank aggregation for gene list integration and meta-analysis" (1,305) and "g:Profiler—a web server for functional interpretation of gene lists (2011 update)" (527).

Published TypeFieldAccessCitations

Showing 50 of 57 papers. Every paper is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) Uku Raudvere, Liis Kolberg, Ivan Kuzmin et al. · Nucleic Acids Research Open access	30 Apr 2019	5,560
2	Robust rank aggregation for gene list integration and meta-analysis Raivo Kolde, Sven Laur, Priit Adler et al. · Bioinformatics Open access	12 Jan 2012	1,305
3	g:Profiler—a web server for functional interpretation of gene lists (2011 update) Jüri Reimand, T. V. Arak, Jaak Vilo · Nucleic Acids Research Open access	6 Jun 2011	527
4	AIRE-Deficient Patients Harbor Unique High-Affinity Disease-Ameliorating Autoantibodies Steffen Meyer et al. · Cell Open access	Jul 2016	299
5	Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach Anne K. Krug et al. · Archives of Toxicology Open access	20 Nov 2012	237
6	Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods Priit Adler, Raivo Kolde, Meelis Kull et al. · Genome biology Open access	4 Dec 2009	153
7	Design Principles of Concentration-Dependent Transcriptome Deviations in Drug-Exposed Differentiating Stem Cells Tanja Waldmann, Eugen Rempel, Nina V. Balmer et al. · Chemical Research in Toxicology Open access	2 Jan 2014	110
8	GOsummaries: an R Package for Visual Functional Annotation of Experimental Data Raivo Kolde, Jaak Vilo · F1000Research Open access	18 Aug 2015	107
9	Computational biology: deep learning William Jones, Kaur Alasoo, Dmytro Fishman et al. · Emerging Topics in Life Sciences Open access	14 Nov 2017	103
10	Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions Sulev Reisberg, Kristi Krebs, Maarja Lepamets et al. · Genetics in Medicine Open access	16 Oct 2018	99
11	Epigenetic changes and disturbed neural development in a human embryonic stem cell-based model relating to the fetal valproate syndrome Nina V. Balmer, Matthias K. Weng, Bastian Zimmer et al. · Human Molecular Genetics Open access	20 Jun 2012	99
12	A Data Integration Approach to Mapping OCT4 Gene Regulatory Networks Operative in Embryonic Stem Cells and Embryonal Carcinoma Cells Marc Jung, Hedi Peterson, Lukas Chávez et al. · PLoS ONE Open access	20 May 2010	89
13	Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations Sulev Reisberg, Tatjana Iljasenko, Kristi Läll et al. · PLoS ONE Open access	5 Jul 2017	85
14	From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects Nina V. Balmer, Stefanie Klima, Eugen Rempel et al. · Archives of Toxicology Open access	17 Jun 2014	78
15	Characterization of the Phosphoinositide 3-Kinase-Dependent Transcriptome in Murine Embryonic Stem Cells: Identification of Novel Regulators of Pluripotency Michael P. Storm, Benjamin Kumpfmueller, Belinda A.N. Thompson et al. · Stem Cells Open access	15 Jan 2009	72
16	Melanocytes in the Skin – Comparative Whole Transcriptome Analysis of Main Skin Cell Types Paula Reemann, Ene Reimann, Sten Ilmjärv et al. · PLoS ONE Open access	29 Dec 2014	67
17	C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis Kaido Lepik, Tarmo Annilo, Viktorija Kukuškina et al. · PLoS Computational Biology Open access	18 Sep 2017	64
18	The metabolic analysis of psoriasis identifies the associated metabolites while providing computational models for the monitoring of the disease Aigar Ottas, Dmytro Fishman, Tiia-Linda Okas et al. · Archives of Dermatological Research Open access	10 Jul 2017	62
19	Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer Signe Altmäe, Karin Tamm-Rosenstein, Francisco José Esteban et al. · Reproductive BioMedicine Online Open access	28 Mar 2016	58
20	Signs of innate immune activation and premature immunosenescence in psoriasis patients Liisi Šahmatova, Elena Sügis, Marina Šunina et al. · Scientific Reports Open access	2 Aug 2017	57
21	Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins Dmytro Fishman et al. · Frontiers in Immunology Open access	15 Aug 2017	51
22	Identifying Cases of Type 2 Diabetes in Heterogeneous Data Sources: Strategy from the EMIF Project Giuseppe Roberto et al. · PLoS ONE Open access	31 Aug 2016	51
23	Neuroglobin-Deficiency Exacerbates Hif1A and c-FOS Response, but Does Not Affect Neuronal Survival during Severe Hypoxia In Vivo Christian Ansgar Hundahl, Hendrik Luuk, Sten Ilmjärv et al. · PLoS ONE Open access	2 Dec 2011	48
24	Blood serum metabolome of atopic dermatitis: Altered energy cycle and the markers of systemic inflammation Aigar Ottas, Dmytro Fishman, Tiia-Linda Okas et al. · PLoS ONE Open access	27 Nov 2017	43
25	Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data Yun Chen, Mette Jørgensen, Raivo Kolde et al. · BMC Genomics Open access	3 Nov 2011	39
26	Three LIF-dependent signatures and gene clusters with atypical expression profiles, identified by transcriptome studies in mouse ES cells and early derivatives Marina Trouillas, Claire Saucourt, Bertrand Guillotin et al. · BMC Genomics Open access	9 Feb 2009	37
27	Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development Nathalie Billon, Raivo Kolde, Jüri Reimand et al. · Genome biology Open access	3 Aug 2010	36
28	Validating Fitbit Zip for monitoring physical activity of children in school: a cross-sectional study Kerli Mooses, Marek Oja, Sulev Reisberg et al. · BMC Public Health Open access	11 Jul 2018	35
29	Test systems of developmental toxicity: state-of-the art and future perspectives Marcel Leist, Annette Ringwald, Raivo Kolde et al. · Archives of Toxicology Open access	4 Nov 2013	35
30	Multiplex analysis of 40 cytokines do not allow separation between endometriosis patients and controls Tamara Knific, Dmytro Fishman, Andrej Vogler et al. · Scientific Reports Open access	13 Nov 2019	29
31	Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling Helle Sadam, Arno Pihlak, Anri Kivil et al. · EBioMedicine Open access	2 Feb 2018	29
32	Whole-genome expression analysis reveals genes associated with treatment response to escitalopram in major depression Kristi Pettai, Lili A. Milani, Anu Tammiste et al. · European Neuropsychopharmacology	23 Jul 2016	28
33	Gene Expression Signatures Defining Fundamental Biological Processes in Pluripotent, Early, and Late Differentiated Embryonic Stem Cells John Antonydas Gaspar, Michael Xavier Doss, Johannes Winkler et al. · Stem Cells and Development Open access	15 Mar 2012	23
34	Endometrial cancer diagnostic and prognostic algorithms based on proteomics, metabolomics, and clinical data: a systematic review Andrea Romano, Tea Lanišnik Rižner, Henrica M.J. Werner et al. · Frontiers in Oncology ReviewOpen access	6 Apr 2023	21
35	Fast approximate hierarchical clustering using similarity heuristics Meelis Kull, Jaak Vilo · BioData Mining Open access	22 Sep 2008	21
36	Development and external validation of prediction models for adverse health outcomes in rheumatoid arthritis: A multinational real-world cohort analysis Cynthia Barcelon Yang et al. · Seminars in Arthritis and Rheumatism Open access	14 Jun 2022	20
37	Trajectories: a framework for detecting temporal clinical event sequences from health data standardized to the Observational Medical Outcomes Partnership (OMOP) Common Data Model Kadri Künnapuu, Solomon Ioannou, Kadri Ligi et al. · JAMIA Open Open access	7 Jan 2022	17
38	PGC-1α Signaling Increases GABA(A) Receptor Subunit α2 Expression, GABAergic Neurotransmission and Anxiety-Like Behavior in Mice Taavi Vanaveski, Svetlana M. Molchanova, Dan Duc Pham et al. · Frontiers in Molecular Neuroscience Open access	Feb 2021	17
39	Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay Marilena Colaianna, Sten Ilmjärv, Hedi Peterson et al. · Archives of Toxicology Open access	25 Mar 2016	16
40	Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells Hedi Peterson, Raed Abu Dawud, Abhishek Dinkarnath Garg et al. · Frontiers in Physiology Open access	2013	15
41	Estimating differential expression from multiple indicators Sten Ilmjärv, Christian Ansgar Hundahl, Riin Reimets et al. · Nucleic Acids Research Open access	27 Feb 2014	14
42	Ranking Genes by Their Co‐expression to Subsets of Pathway Members Priit Adler, Hedi Peterson, Phaedra Agius et al. · Annals of the New York Academy of Sciences	Mar 2009	11
43	Prevaccination Prevalence of Type-Specific Human Papillomavirus Infection by Grade of Cervical Cytology in Estonia Anneli Uusküla, Marek Oja, Sirli Tamm et al. · JAMA Network Open Open access	6 Feb 2023	10
44	VisHiC--hierarchical functional enrichment analysis of microarray data D. Krushevskaya, Hedi Peterson, Jüri Reimand et al. · Nucleic Acids Research Open access	29 May 2009	10
45	An exploratory phenome wide association study linking asthma and liver disease genetic variants to electronic health records from the Estonian Biobank Glen James, Sulev Reisberg, Kaido Lepik et al. · PLoS ONE Open access	12 Apr 2019	9
46	A field-wide assessment of differential expression profiling by high-throughput sequencing reveals widespread bias Taavi Päll, Hannes Luidalepp, Tanel Tenson et al. · PLoS Biology Open access	2 Mar 2023	7
47	PAWER: protein array web exploreR Dmytro Fishman, Ivan Kuzmin, Priit Adler et al. · BMC Bioinformatics Open access	17 Sep 2020	7
48	Global transcriptomic analysis of murine embryonic stem cell‐derived brachyury+ (T) cells Michael Xavier Doss, Vilas Wagh, Herbert Schulz et al. · Genes to Cells Open access	25 Feb 2010	7
49	funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data Liis Kolberg, Ivan Kuzmin, Priit Adler et al. · BMC Genomics Open access	14 Nov 2018	6
50	Leveraging biobank-scale rare and common variant analyses to identify ASPHD1 as the main driver of reproductive traits in the 16p11.2 locus Katrin Männik et al. · bioRxiv (Cold Spring Harbor Laboratory) PreprintOpen access	26 Jul 2019	5

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.