Institution · SilicoLife (Portugal)
Most cited papers from SilicoLife (Portugal)
What are the most cited papers from SilicoLife (Portugal)?
The most cited paper from SilicoLife (Portugal) is "Big data in healthcare: management, analysis and future prospects" (Sabyasachi Dash, Sushil Kumar Shakyawar, Mohit Sharma et al., 2019), with 1,770 citations. Next come "MEMOTE for standardized genome-scale metabolic model testing" (572) and "National Food, Nutrition, and Physical Activity Survey of the Portuguese General Population (2015-2016): Protocol for Design and Development" (132).
Showing 50 of 50 papers. Every paper is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | Big data in healthcare: management, analysis and future prospects Sabyasachi Dash, Sushil Kumar Shakyawar, Mohit Sharma et al. · Journal Of Big Data | 19 Jun 2019 | 1,770 |
| 2 | MEMOTE for standardized genome-scale metabolic model testing Christian Lieven et al. · Nature Biotechnology | Mar 2020 | 572 |
| 3 | National Food, Nutrition, and Physical Activity Survey of the Portuguese General Population (2015-2016): Protocol for Design and Development Carla Maria Moura Lopes, Duarte P.M. Torres, Andréia Oliveira et al. · JMIR Research Protocols | 15 Feb 2018 | 132 |
| 4 | In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories Paulo Maia, Miguel Rocha, Isabel Rocha · Microbiology and Molecular Biology Reviews | 25 Nov 2015 | 130 |
| 5 | A Review of Dynamic Modeling Approaches and Their Application in Computational Strain Optimization for Metabolic Engineering Osvaldo D. Kim, Miguel Rocha, Paulo Maia · Frontiers in Microbiology | 31 Jul 2018 | 110 |
| 6 | National Food, Nutrition and Physical Activity Survey of the Portuguese general population Carla Maria Moura Lopes, Duarte P.M. Torres, Andréia Oliveira et al. · EFSA Supporting Publications | Dec 2017 | 76 |
| 7 | Current state and challenges for dynamic metabolic modeling Eleni Vasilakou, Daniel Machado, Axel Theorell et al. · Current Opinion in Microbiology | 26 Jul 2016 | 46 |
| 8 | Parasite Glycobiology: A Bittersweet Symphony João Alexandre Rodrigues, Álvaro Acosta-Serrano, Markus Aebi et al. · PLoS Pathogens | 12 Nov 2015 | 46 |
| 9 | Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z Bruno Pereira, Joana Miguel, Paulo Vilaça et al. · BMC Systems Biology | 30 May 2018 | 37 |
| 10 | Metabolic engineering strategies for butanol production in Escherichia coli Sofia Ferreira, Rui Pereira, A. Wahl et al. · Biotechnology and Bioengineering | 6 May 2020 | 34 |
| 11 | Memote: A community driven effort towards a standardized genome-scale metabolic model test suite Christian Lieven et al. · bioRxiv (Cold Spring Harbor Laboratory) | 21 Jun 2018 | 31 |
| 12 | Curcumin biosynthesis from ferulic acid by engineered Saccharomyces cerevisiae João Rainha, Joana L. Rodrigues, Cristiana Faria et al. · Biotechnology Journal | 9 Dec 2021 | 27 |
| 13 | Model‐guided development of an evolutionarily stable yeast chassis Filipa M. Pereira, Hélder Lopes, Paulo Maia et al. · Molecular Systems Biology | Jul 2021 | 19 |
| 14 | Genome-Wide Semi-Automated Annotation of Transporter Systems Óscar Dias, Daniel G. Gomes, Paulo Vilaça et al. · IEEE Transactions on Computational Biology and Bioinformatics | 11 Feb 2016 | 19 |
| 15 | Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate Sofia Ferreira, Rui Pereira, Filipe Liu et al. · Biotechnology for Biofuels | 29 Sep 2019 | 17 |
| 16 | Genetic variants as ovarian cancer first-line treatment hallmarks: A systematic review and meta-analysis Joana Assis, Carina Pereira, Augusto Nogueira et al. · Cancer Treatment Reviews | 23 Oct 2017 | 17 |
| 17 | Integrating system dynamics and machine learning for environmental impact analysis of building materials in the demolition process Babatunde Oluwaseun Ajayi, Mayowa Emmanuel Bamisaye, Hugo Macedo et al. · Scientific Reports | 25 Jul 2025 | 10 |
| 18 | Computer-aided design and implementation of efficient biosynthetic pathways to produce high added-value products derived from tyrosine in Escherichia coli Sofia Ferreira, Alexandra Balola, Anastasia Sveshnikova et al. · Frontiers in Bioengineering and Biotechnology | 24 Jun 2024 | 10 |
| 19 | Comparison of pathway analysis and constraint-based methods for cell factory design Vítor Vieira, Paulo Maia, Miguel Rocha et al. · BMC Bioinformatics | 20 Jun 2019 | 10 |
| 20 | Development of an information retrieval tool for biomedical patents Tiago L. Alves, Rúben Rodrigues, Hugo Costa et al. · Computer Methods and Programs in Biomedicine | 14 Mar 2018 | 10 |
| 21 | Comparison analysis of PM transverse flux outer rotor machines with and without magnetic shunts Oleksandr Dobzhanskyi, Rupert Gouws, Ebrahim Amiri | Sep 2016 | 10 |
| 22 | Delay sensing for long-term variations and defects monitoring in safety–critical applications J. C. Vazquez, Victor H. Champac, Adriel Ziesemer et al. · Analog Integrated Circuits and Signal Processing | 6 Oct 2011 | 9 |
| 23 | An integrated network visualization framework towards metabolic engineering applications Alberto Noronha, Paulo Vilaça, Miguel Rocha · BMC Bioinformatics | Dec 2014 | 8 |
| 24 | Analyzing and Designing Cell Factories with OptFlux Paulo Vilaça, Paulo Maia, Hugo Giesteira et al. · Methods in molecular biology | 8 Dec 2017 | 7 |
| 25 | CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data Rafael Carreira, Pedro Evangelista, Paulo Maia et al. · BMC Systems Biology | Dec 2014 | 7 |
| 26 | Development of Text Mining Tools for Information Retrieval from Patents Tiago L. Alves, Rúben Rodrigues, Hugo Costa et al. · Advances in intelligent systems and computing | 2017 | 5 |
| 27 | Identification of robust strain designs via tandem pFBA/LMOMA phenotype prediction Paulo Maia, Isabel Rocha, Miguel Rocha · Proceedings of the Genetic and Evolutionary Computation Conference Companion | 11 Jul 2017 | 4 |
| 28 | A Critical Evaluation of Automatic Atom Mapping Algorithms and Tools Nuno Sampaio Osório, Paulo Vilaça, Miguel Rocha · Advances in intelligent systems and computing | 2017 | 4 |
| 29 | An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction João Cardoso, Paulo Vilaça, Simão Soares et al. · Lecture notes in computer science | 2012 | 4 |
| 30 | Yeast chassis design for production of dicarboxylic acids Filipa M. Pereira, Helena Lopes, Paulo Maia et al. · New Biotechnology | 22 Sep 2018 | 3 |
| 31 | An integrated framework for strain optimization Paulo Maia, Isabel Rocha, Miguel Rocha | Jun 2013 | 3 |
| 32 | A new genome-scale metabolic model of oleaginous microalgae with refined lipid metabolism clarifies Microchloropsis gaditana mutant phenotypes Clémence M Dupont-Thibert, Sylvaine Roy, Sylvia Mendes Carneiro et al. · Bioresource Technology | 9 Nov 2025 | 2 |
| 33 | Exploring Xylella fastidiosa’s Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium Alexandre Oliveira, Emanuel Cunha, Miguel Ângelo Fernandes da Silva et al. · Lecture notes in networks and systems | 19 Oct 2022 | 2 |
| 34 | Development of a Machine Learning Framework for Biomedical Text Mining Rúben Rodrigues, Hugo Costa, Miguel Rocha · Advances in intelligent systems and computing | 2016 | 2 |
| 35 | Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models Vítor Vieira, Paulo Maia, Isabel Rocha et al. · Advances in intelligent systems and computing | 2016 | 2 |
| 36 | TNA4OptFlux – a software tool for the analysis of strain optimization strategies José P. Pinto, Rui Pereira, João Cardoso et al. · BMC Research Notes | 3 May 2013 | 2 |
| 37 | Network Visualization Tools to Enhance Metabolic Engineering Platforms Alberto Noronha, Paulo Vilaça, Miguel Rocha · Advances in intelligent systems and computing | 2013 | 2 |
| 38 | A new genome-scale metabolic model of oleaginous microalgae with refined lipid metabolism elucidates Microchloropsis gaditana mutant phenotypes. Clémence M Dupont-Thibert, Sylvaine Roy, Sónia Carneiro et al. · bioRxiv (Cold Spring Harbor Laboratory) | 6 Dec 2023 | 1 |
| 39 | Predicting the number of biochemical transformations needed to synthesize a compound João Correia, Rafael Carreira, Vítor Pereira et al. · 2022 International Joint Conference on Neural Networks (IJCNN) | 18 Jul 2022 | 1 |
| 40 | In Silico Predictions for Fucoxanthin Production by the Diatom Phaeodactylum Tricornutum Cláudia Marlene Bauer, Paulo Vilaça, Fernanda Ramlov et al. · Advances in intelligent systems and computing | 16 Aug 2018 | 1 |
| 41 | Development of a Framework for Metabolic Pathway Analysis-Driven Strain Optimization Methods Vítor Vieira, Paulo Maia, Isabel Rocha et al. · Interdisciplinary Sciences Computational Life Sciences | 25 Feb 2017 | 1 |
| 42 | Reconstructing transcriptional Regulatory Networks using data integration and Text Mining Rafael Teodósio Pereira, Hugo Costa, Sónia Carneiro et al. | Nov 2015 | 1 |
| 43 | Extracting kinetic information from literature with KineticRE Ana Alão Freitas, Hugo Costa, Miguel Rocha et al. · PubMed | 2015 | 1 |
| 44 | Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies Rui Pereira, Paulo Vilaça, Paulo Maia et al. · ACS Synthetic Biology | 29 Mar 2019 | 1 |
| 45 | A Dynamically Reconfigurable Power Management System With Self-Monitoring Capabilities for Energy-Efficient SoCs Henrique A. Pocinho, Rodrigo Capeleiro, Tiago Moita et al. · IEEE Open Journal of the Solid-State Circuits Society | 2025 | 0 |
| 46 | Reconstruction of a genome-scale metabolic model of Microchloropsis gaditana with detailed lipid metabolism. Clémence Dupont Thibert, Sónia Carneiro, Pereira, Bruno et al. · HAL (Le Centre pour la Communication Scientifique Directe) | 10 Jul 2022 | 0 |
| 47 | Delta-Sigma Control Loop For Energy-Efficient Electrical Stimulation with Arbitrary-Shape Stimuli Amin Rashidi, Hassan Rivandi, Miloš Grubor et al. | 19 Oct 2023 | 0 |
| 48 | Automating the Extraction of Essential Genes from Literature Rúben Rodrigues, Hugo Costa, Miguel Rocha · Lecture notes in computer science | 2018 | 0 |
| 49 | Reg4OptFlux: an OptFlux plug-in that comprises meta-heuristics approaches for Metabolic engineering using integrated models Orlando Rocha, Paulo Vilaça, Miguel Rocha et al. | Jul 2014 | 0 |
| 50 | A Text Mining Approach for the Extraction of Kinetic Information from Literature Ana Alão Freitas, Hugo Costa, Miguel Rocha et al. · Advances in intelligent systems and computing | 2015 | 0 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.