Topic · Probiotics and Fermented Foods
Most cited papers in Probiotics and Fermented Foods
What are the most cited papers in Probiotics and Fermented Foods?
The most cited paper in Probiotics and Fermented Foods is "DADA2: High-resolution sample inference from Illumina amplicon data" (Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al., 2016), with 37,958 citations. Next come "Diet rapidly and reproducibly alters the human gut microbiome" (10,461) and "The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic" (9,518).
Showing 50 of 100 papers. Every paper with more than 1,657 citations is listed.
| # | Paper | ||
|---|---|---|---|
| 1 | DADA2: High-resolution sample inference from Illumina amplicon data Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods | 23 May 2016 | 37,958 |
| 2 | Diet rapidly and reproducibly alters the human gut microbiome Lawrence A. David, Corinne F. Maurice, Rachel N. Carmody et al. · Nature | 11 Dec 2013 | 10,461 |
| 3 | The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic Colin Hill, Francisco Guarner, Gregor Reid et al. · Nature Reviews Gastroenterology & Hepatology | 10 Jun 2014 | 9,518 |
| 4 | Diversity of the Human Intestinal Microbial Flora Paul B. Eckburg, Elisabeth M. Bik, Charles Noah Bernstein et al. · Science | 14 Apr 2005 | 7,956 |
| 5 | Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies Seok-Hwan Yoon, Sung Min Ha, Soon‐Jae Kwon et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 22 Dec 2016 | 7,916 |
| 6 | Enterotypes of the human gut microbiome Manimozhiyan Arumugam et al. · Nature | 19 Apr 2011 | 7,806 |
| 7 | From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites Ara Koh, Filipe De Vadder, Petia Kovatcheva‐Datchary et al. · Cell | Jun 2016 | 7,123 |
| 8 | Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances Irith Wiegand, Kai Hilpert, Robert E. W. Hancock · Nature Protocols | 17 Jan 2008 | 6,274 |
| 9 | Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin Nicholas A. Bokulich, Benjamin D. Kaehler, Jai Ram Rideout et al. · Microbiome | 17 May 2018 | 6,258 |
| 10 | Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria? Kim A. Brogden · Nature Reviews Microbiology | 10 Feb 2005 | 5,842 |
| 11 | Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells Yukihiro Furusawa et al. · Nature | 13 Nov 2013 | 5,575 |
| 12 | Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics Glenn R. Gibson, Robert W. Hutkins, Mary Ellen Sanders et al. · Nature Reviews Gastroenterology & Hepatology | 14 Jun 2017 | 5,560 |
| 13 | UNIDENTIFIED CURVED BACILLI IN THE STOMACH OF PATIENTS WITH GASTRITIS AND PEPTIC ULCERATION Barry James Marshall, J.Robin Warren · The Lancet | Jun 1984 | 5,534 |
| 14 | The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis Patrick M. Smith, Michael R. Howitt, Nicolai S. Panikov et al. · Science | 5 Jul 2013 | 5,478 |
| 15 | Host-Bacterial Mutualism in the Human Intestine Fredrik Bäckhed, Ruth E. Ley, Justin Laine Sonnenburg et al. · Science | 24 Mar 2005 | 5,363 |
| 16 | A MEDIUM FOR THE CULTIVATION OF LACTOBACILLI J. C. de Man, Morrison Rogosa, M. Elisabeth Sharpe · Journal of Applied Bacteriology | Apr 1960 | 5,358 |
| 17 | Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements Aaron E. Darling, Bob Mau, Frederick R. Blattner et al. · Genome Research | Jul 2004 | 5,312 |
| 18 | INFOGEST static in vitro simulation of gastrointestinal food digestion André Brodkorb et al. · Nature Protocols | 18 Mar 2019 | 5,074 |
| 19 | Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation Nicholas Arpaia, Clarissa Campbell, Xiying Fan et al. · Nature | 13 Nov 2013 | 4,892 |
| 20 | Ribosomal Database Project: data and tools for high throughput rRNA analysis James R. Cole, Qiong Wang, Jordan A. Fish et al. · Nucleic Acids Research | 27 Nov 2013 | 4,655 |
| 21 | Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity Amandine Everard, Clara Belzer, Lucie Geurts et al. · Proceedings of the National Academy of Sciences | 13 May 2013 | 4,539 |
| 22 | Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis Seth Rakoff-Nahoum, Justin C. Paglino, Fatima Eslami-Varzaneh et al. · Cell | Jul 2004 | 4,278 |
| 23 | Modeling of the Bacterial Growth Curve Marcel H. Zwietering, Ida Jongenburger, FRANK M. ROMBOUTS et al. · Applied and Environmental Microbiology | Jun 1990 | 4,275 |
| 24 | Interactions Between the Microbiota and the Immune System Lora V. Hooper, Dan R. Littman, Andrew J. Macpherson · Science | 6 Jun 2012 | 4,273 |
| 25 | Probiotics in man and animals R. FULLER AFRC · Journal of Applied Bacteriology | May 1989 | 4,158 |
| 26 | ABC Transporters: From Microorganisms to Man Christopher F. Higgins · Annual Review of Cell Biology | Nov 1992 | 4,026 |
| 27 | A large-scale evaluation of algorithms to calculate average nucleotide identity Seok-Hwan Yoon, Sung Min Ha, Jeongmin Lim et al. · Antonie van Leeuwenhoek | 15 Feb 2017 | 3,766 |
| 28 | Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile Els van Nood, Anne Vrieze, Max Nieuwdorp et al. · New England Journal of Medicine | 16 Jan 2013 | 3,746 |
| 29 | The human microbiome: at the interface of health and disease Ilseung Cho, Martin J. Blaser · Nature Reviews Genetics | 13 Mar 2012 | 3,598 |
| 30 | Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine Ruth E. Ley, Daniel A. Peterson, Jeffrey I. Gordon · Cell | Feb 2006 | 3,436 |
| 31 | Gut flora in health and disease Francisco Guarner, Juan‐R. Malagelada · The Lancet | Feb 2003 | 3,379 |
| 32 | A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae Jinshui Zheng, Stijn Wittouck, Elisa Salvetti et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | Apr 2020 | 3,325 |
| 33 | Bacterial Community Variation in Human Body Habitats Across Space and Time Elizabeth K. Costello, Christian L. Lauber, Micah Hamady et al. · Science | 5 Nov 2009 | 3,312 |
| 34 | OrthoANI: An improved algorithm and software for calculating average nucleotide identity Imchang Lee, Yeong Ouk Kim, Sang‐Cheol Park et al. · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 19 Nov 2015 | 3,258 |
| 35 | Binning metagenomic contigs by coverage and composition Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn et al. · Nature Methods | 14 Sep 2014 | 3,116 |
| 36 | Role of the normal gut microbiota Sai Manasa Jandhyala · World Journal of Gastroenterology | 2015 | 3,072 |
| 37 | Formation of propionate and butyrate by the human colonic microbiota Petra Louis, Harry James Flint · Environmental Microbiology | 5 Nov 2016 | 3,060 |
| 38 | Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults Nadja Larsen, Finn Kvist Vogensen, Frans W.J. van den Berg et al. · PLoS ONE | 4 Feb 2010 | 3,014 |
| 39 | Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins Nicholas J. Croucher, Andrew J. Page, Thomas R. Connor et al. · Nucleic Acids Research | 20 Nov 2014 | 3,011 |
| 40 | An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System Sarkis K. Mazmanian, Cui Hua Liu, Arthur O. Tzianabos et al. · Cell | Jul 2005 | 2,928 |
| 41 | Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria Rodrigo Mendes, Marco Kruijt, Irene de Bruijn et al. · Science | 5 May 2011 | 2,913 |
| 42 | Development of the Human Infant Intestinal Microbiota Chana Palmer, Elisabeth M. Bik, Daniel B. DiGiulio et al. · PLoS Biology | 18 Jun 2007 | 2,892 |
| 43 | Bile salt biotransformations by human intestinal bacteria Jason Michael Ridlon, Dae-Joong Kang, Phillip B. Hylemon · Journal of Lipid Research | 18 Nov 2005 | 2,891 |
| 44 | The gut flora as a forgotten organ Ann M. O’Hara, Fergus Shanahan · EMBO Reports | Jul 2006 | 2,821 |
| 45 | A framework for human microbiome research Barbara A. Methé et al. · Nature | Jun 2012 | 2,794 |
| 46 | Influence of diet on the gut microbiome and implications for human health Rasnik Singh, Hsin-Wen Chang, Di Yan et al. · Journal of Translational Medicine | 7 Apr 2017 | 2,655 |
| 47 | GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy Donovan H. Parks, Maria S. Chuvochina, Christian Rinke et al. · Nucleic Acids Research | 8 Sep 2021 | 2,646 |
| 48 | Rapid and Simple Determination of the Escherichia coli Phylogenetic Group Olivier Clermont, Stéphane Bonacorsi, Édouard Bingen · Applied and Environmental Microbiology | Oct 2000 | 2,637 |
| 49 | Succession of microbial consortia in the developing infant gut microbiome Jeremy E. Koenig, Aymé Spor, Nicholas B. Scalfone et al. · Proceedings of the National Academy of Sciences | 28 Jul 2010 | 2,609 |
| 50 | The human tumor microbiome is composed of tumor type–specific intracellular bacteria Deborah Nejman et al. · Science | 28 May 2020 | 2,523 |
Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for a field when OpenAlex files it under one of the field's topics; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.