Institution · AGRF Ltd

Most cited papers from AGRF Ltd

AGRF Ltd

What are the most cited papers from AGRF Ltd?

The most cited paper from AGRF Ltd is "Protein Identification and Analysis Tools in the ExPASy Server" (Marc Ronald Wilkins, Elisabeth Gasteiger, Amos Bairoch et al., 2003), with 6,262 citations. Next come "Genome-wide association study identifies novel breast cancer susceptibility loci" (2,342) and "Amyloid-β and tau synergistically impair the oxidative phosphorylation system in triple transgenic Alzheimer's disease mice" (662).

Published TypeFieldAccessAuthorsCitations

Showing 50 of 59 papers. Every paper with more than 125 citations is listed.

Most cited papers, sortable by citations and release date
#	Paper
1	Protein Identification and Analysis Tools in the ExPASy Server Marc Ronald Wilkins, Elisabeth Gasteiger, Amos Bairoch et al. · Humana Press eBooks Book chapterOpen access	14 Nov 2003	6,262
2	Genome-wide association study identifies novel breast cancer susceptibility loci Douglas F. Easton et al. · Nature Open access239 authors	27 May 2007	2,342
3	Amyloid-β and tau synergistically impair the oxidative phosphorylation system in triple transgenic Alzheimer's disease mice Virginie F. Rhein, Xiaomin Song, Andreas Wiesner et al. · Proceedings of the National Academy of Sciences Open access	6 Nov 2009	662
4	Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry Ben C. Collins et al. · Nature Communications Open access	10 Aug 2017	628
5	The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance Charles Wang et al. · Nature Biotechnology Open access	21 Aug 2014	554
6	Extraction of membrane proteins by differential solubilization for separation using two‐dimensional gel electrophoresis Mark P. Molloy, Ben Herbert, Bradley J. Walsh et al. · Electrophoresis	May 1998	492
7	Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments Luyi Tian, Xueyi Dong, Saskia Freytag et al. · Nature Methods	27 May 2019	419
8	A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds James Kijas, David Townley, Brian Paul Dalrymple et al. · PLoS ONE Open access	28 Feb 2009	381
9	Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia Raymond Tobler et al. · Nature Open access	7 Mar 2017	372
10	Genome reduction in Leptospira borgpetersenii reflects limited transmission potential Dieter Bulach, Richard L. Zuerner, Peter Wilson et al. · Proceedings of the National Academy of Sciences Open access	14 Sep 2006	369
11	A single‐cell transcriptome atlas of the adult human retina Samuel W. Lukowski et al. · The EMBO Journal Open access	22 Aug 2019	364
12	Deletion at ITPR1 Underlies Ataxia in Mice and Spinocerebellar Ataxia 15 in Humans Joyce C. H. van de Leemput et al. · PLoS Genetics Open access	14 Jun 2007	350
13	The genomic landscape of small intestine neuroendocrine tumors Michaela S. Banck, Rahul Kanwar, Amit A. Kulkarni et al. · Journal of Clinical Investigation Open access	14 May 2013	333
14	Two-Dimensional Electrophoresis of Membrane Proteins Using Immobilized pH Gradients Mark P. Molloy · Analytical Biochemistry	Apr 2000	322
15	Plasma Aβ42/40 ratio, p‐tau181, GFAP, and NfL across the Alzheimer's disease continuum: A cross‐sectional and longitudinal study in the AIBL cohort Pratishtha Chatterjee, Steve Pedrini, James D. Doecke et al. · Alzheimer s & Dementia Open access	21 Jul 2022	320
16	Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii Neil F. W. Saunders et al. · Genome Research Open access	12 Jun 2003	271
17	Fetuin B Is a Secreted Hepatocyte Factor Linking Steatosis to Impaired Glucose Metabolism Ruth C. R. Meex, Andrew J. Hoy, Alexander John Morris et al. · Cell Metabolism Open access	25 Oct 2015	263
18	Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database Andrew B. Bissett et al. · GigaScience Open access	17 May 2016	252
19	Characterisation of mouse epididymosomes reveals a complex profile of microRNAs and a potential mechanism for modification of the sperm epigenome Jackson N. Reilly, Eileen A. McLaughlin, Simone J. Stanger et al. · Scientific Reports Open access	23 Aug 2016	251
20	Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing Luyi Tian et al. · Genome biology Open access	11 Nov 2021	243
21	Improved protein solubility in two‐dimensional electrophoresis using tributyl phosphine as reducing agent Ben Herbert, Mark P. Molloy, Andrew A. Gooley et al. · Electrophoresis	May 1998	241
22	Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere Chanyarat Paungfoo‐Lonhienne, Yun Kit Yeoh, Naga Kasinadhuni et al. · Scientific Reports Open access	2 Mar 2015	237
23	A Cortactin-CD2-associated Protein (CD2AP) Complex Provides a Novel Link between Epidermal Growth Factor Receptor Endocytosis and the Actin Cytoskeleton Danielle K. Lynch, Stephanie C. Winata, Ruth J. Lyons et al. · Journal of Biological Chemistry Open access	Jun 2003	230
24	Multiple testing corrections in quantitative proteomics: A useful but blunt tool Dana Pascovici, David C. L. Handler, Jemma X. Wu et al. · PROTEOMICS Open access	27 Jul 2016	228
25	The MicroRNA Signature of Mouse Spermatozoa Is Substantially Modified During Epididymal Maturation1 Brett Nixon, Simone J. Stanger, Bettina P. Mihalas et al. · Biology of Reproduction	3 Sep 2015	226
26	Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development Marilyn B. Renfree et al. · Genome biology Open access103 authors	19 Aug 2011	215
27	Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling Bhupinder Pal, Yunshun Chen, François Vaillant et al. · Nature Communications Open access	14 Nov 2017	213
28	CCNF mutations in amyotrophic lateral sclerosis and frontotemporal dementia Kelly L. Williams et al. · Nature Communications Open access	15 Apr 2016	211
29	Global Analysis of Outer Membrane Proteins from Leptospira interrogans Serovar Lai Paul A Cullen, Stuart J. Cordwell, Dieter Bulach et al. · Infection and Immunity Open access	May 2002	205
30	Recurrent BCOR Internal Tandem Duplication and YWHAE-NUTM2B Fusions in Soft Tissue Undifferentiated Round Cell Sarcoma of Infancy Yu‐Chien Kao, Yun-Shao Sung, Lei Zhang et al. · The American Journal of Surgical Pathology Open access	5 Mar 2016	202
31	Identification and Analysis of Error Types in High-Throughput Genotyping Kelly R. Ewen, Melanie Bahlo, Susan A. Treloar et al. · The American Journal of Human Genetics Open access	Sep 2000	197
32	Epigenetic estimation of age in humpback whales Andrea Maree Polanowski, Jooke Robbins, David Chandler et al. · Molecular Ecology Resources Open access	8 Mar 2014	196
33	Genomewide Linkage Study in 1,176 Affected Sister Pair Families Identifies a Significant Susceptibility Locus for Endometriosis on Chromosome 10q26 Susan A. Treloar, Jacqueline Wicks, Dale R. Nyholt et al. · The American Journal of Human Genetics Open access	4 Aug 2005	195
34	Complementing genomics with proteomics: The membrane subproteome ofPseudomonas aeruginosa PAO1 Amanda S. Nouwens, Stuart J. Cordwell, Martin R. Larsen et al. · Electrophoresis	Nov 2000	192
35	Proteomics study reveals the molecular mechanisms underlying water stress tolerance induced by Piriformospora indica in barley Mehdi Ghabooli, Behnam Khatabi, Farajolah Shahriary Ahmadi et al. · Journal of Proteomics	10 Oct 2013	188
36	High‐abundance protein depletion: Comparison of methods for human plasma biomarker discovery Veronika Polaskova, Amit Kapur, Alamgir Khan et al. · Electrophoresis Open access	2010	173
37	Proteome analysis of extracellular proteins regulated by the las and rhl quorum sensing systems in Pseudomonas aeruginosa PAO1 Amanda S. Nouwens, Scott A. Beatson, Cynthia B. Whitchurch et al. · Microbiology	30 Apr 2003	160
38	Analysis of in vitro secretion profiles from adipose-derived cell populations Sinead P. Blaber, Rebecca A. Webster, Cameron J. Hill et al. · Journal of Translational Medicine Open access	22 Aug 2012	158
39	Four simple recommendations to encourage best practices in research software Rafael C. Jiménez et al. · F1000Research Open access	13 Jun 2017	157
40	Topological barrier to Cas12a activation by circular DNA nanostructures facilitates autocatalysis and transforms DNA/RNA sensing Fei Deng, Yi Li, Biyao Yang et al. · Nature Communications Open access	5 Mar 2024	153
41	Co-immunoprecipitation with Tau Isoform-specific Antibodies Reveals Distinct Protein Interactions and Highlights a Putative Role for 2N Tau in Disease Chang Liu, Xiaomin Song, Rebecca M. Nisbet et al. · Journal of Biological Chemistry Open access	10 Feb 2016	152
42	A fluorescent natural product for ultra sensitive detection of proteins in one‐dimensional and two‐dimensional gel electrophoresis James A. Mackintosh, Hung-Yoon Choi, Soo‐Han Bae et al. · PROTEOMICS	Dec 2003	152
43	Inactivation of Duplicated Nod Factor Receptor 5 (NFR5) Genes in Recessive Loss-of-Function Non-Nodulation Mutants of Allotetraploid Soybean (Glycine max L. Merr.) Arief Indrasumunar, Attila Kereszt, Iain Robert Searle et al. · Plant and Cell Physiology	9 Dec 2009	149
44	Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes Mehdi Mirzaei et al. · Scientific Reports Open access	28 Sep 2017	148
45	How specific is my SRM?: The issue of precursor and product ion redundancy Jamie Sherman, Matthew J. McKay, Keith Ashman et al. · PROTEOMICS	27 Feb 2009	145
46	Using long-read sequencing to detect imprinted DNA methylation Scott A. Gigante, Quentin Gouil, Alexis Lucattini et al. · Nucleic Acids Research Open access	17 Feb 2019	144
47	scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data Luyi Tian, Shian Su, Xueyi Dong et al. · PLoS Computational Biology Open access	10 Aug 2018	143
48	A duplication at chromosome 11q12.2-11q12.3 is associated with spinocerebellar ataxia type 20 Melanie A. Knight, Dena G. Hernandez, Scott J. Diede et al. · Human Molecular Genetics Open access	4 Sep 2008	141
49	Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis Bruce C. Ross, L. Czajkowski, Dianna M. Hocking et al. · Vaccine	Jul 2001	140
50	Proteome Approach to the Characterisation of Protein Composition in the Developing and Mature Wheat-grain Endosperm Daniel J. Skylas, James A. Mackintosh, Stuart J. Cordwell et al. · Journal of Cereal Science	Sep 2000	139

Citations are OpenAlex's own counts, from its 2026-09-23 snapshot, so the ranking can differ from Google Scholar or Web of Science. A paper is listed for an institution when any of its authors gave it as an affiliation; retracted papers and papers whose citation count cannot be traced to citing works are left out, and a preprint and the article it became are shown once. Release dates are OpenAlex's: where a source gave only a month or a year, that is what is shown. How the lists are chosen.