| 1 | FZU ‒ Institute of Physics of the Academy of Sciences of the Czech RepublicPrague |
#434 | 35.8 | 18.0% | 1,298 |
| 2 | Charles UniversityPrague |
#465 | 35.1 | 14.9% | 3,155 |
| 3 | VSB - Technical University of OstravaOstrava |
#984 | 27.2 | 14.8% | 2,126 |
| 4 | Palacký University OlomoucOlomouc |
#991 | 27.1 | 15.7% | 918 |
| 5 | Czech Technical University in PraguePrague |
#1,045 | 26.5 | 11.2% | 4,154 |
| 6 | University of Chemistry and Technology, PraguePrague |
#1,084 | 26.2 | 10.4% | 1,308 |
| 7 | Brno University of TechnologyBrno |
#1,209 | 25.0 | 10.4% | 2,815 |
| 8 | Masaryk UniversityBrno |
#1,339 | 23.9 | 15.6% | 1,476 |
| 9 | Czech Academy of SciencesPrague |
#1,568 | 22.3 | 17.2% | 792 |
| 10 | University of Hradec KrálovéHradec Králové |
#1,633 | 21.8 | 29.7% | 471 |
| 11 | Czech University of Life Sciences PraguePrague |
#1,747 | 21.1 | 22.0% | 900 |
| 12 | Czech Academy of Sciences, Institute of Organic Chemistry and BiochemistryPrague |
#1,918 | 20.1 | 18.3% | 217 |
| 13 | Central European Institute of TechnologyBrno |
#2,407 | 17.7 | 16.0% | 317 |
| 14 | University of West Bohemia in PilsenPilsen |
#2,697 | 16.5 | 8.5% | 1,177 |
| 15 | Regional Centre of Advanced Technologies and MaterialsOlomouc |
#2,828 | 16.0 | 24.9% | 133 |
| 16 | Mendel University in BrnoBrno |
#2,847 | 16.0 | 14.6% | 528 |
| 17 | University of OstravaOstrava |
#2,850 | 15.9 | 14.3% | 465 |
| 18 | University of PardubicePardubice |
#2,859 | 15.9 | 8.6% | 621 |
| 19 | Czech Academy of Sciences, Global Change Research InstituteBrno |
#3,181 | 14.8 | 29.0% | 124 |
| 20 | Czech Academy of Sciences, J. Heyrovský Institute of Physical ChemistryPrague |
#3,200 | 14.7 | 10.8% | 212 |
| 21 | Czech Academy of Sciences, Institute of Physics of MaterialsBrno |
#3,612 | 13.4 | 14.0% | 209 |
| 22 | University of South Bohemia in České BudějoviceČeské Budějovice |
#3,689 | 13.2 | 24.5% | 401 |
| 23 | Technical University of LiberecLiberec |
#3,731 | 13.1 | 9.8% | 736 |
| 24 | Tomas Bata University in ZlínZlín |
#4,028 | 12.3 | 15.4% | 562 |
| 25 | Czech Academy of Sciences, Institute of Scientific InstrumentsBrno |
#4,152 | 12.0 | 12.0% | 128 |
| 26 | Extreme Light Infrastructure BeamlinesDolní Břežany |
#4,255 | 11.7 | 20.6% | 112 |
| 27 | Czech Academy of Sciences, Institute of MathematicsPrague |
#4,381 | 11.4 | 10.6% | 403 |
| 28 | Czech Academy of Sciences, Institute of Plasma PhysicsPrague |
#4,654 | 10.8 | 19.9% | 197 |
| 29 | Jan Evangelista Purkyně University in Ústí nad LabemÚstí nad Labem |
#4,753 | 10.5 | 14.6% | 252 |
| 30 | Czech Academy of Sciences, Nuclear Physics InstituteŘež |
#4,927 | 10.2 | 13.3% | 191 |
| 31 | Pharmaceutical Biotechnology (Czechia)Prague |
#5,186 | 9.6 | 17.1% | 116 |
| 32 | Czech Academy of Sciences, Institute of GeologyPrague |
#5,386 | 9.2 | 7.7% | 374 |
| 33 | Czech Academy of Sciences, Astronomical InstituteOndřejov |
#5,633 | 8.8 | 20.1% | 164 |
| 34 | Czech Academy of Sciences, Institute of Inorganic ChemistryŘež |
#5,682 | 8.6 | 7.8% | 110 |
| 35 | Czech Academy of Sciences, Institute of Macromolecular ChemistryPrague |
#5,699 | 8.6 | 7.4% | 214 |
| 36 | University of DefenceBrno |
#5,861 | 8.3 | 13.7% | 419 |
| 37 | Czech Geological SurveyPrague |
#5,955 | 8.2 | 17.5% | 125 |
| 38 | Czech Academy of Sciences, Institute of BotanyPrůhonice |
#6,136 | 7.8 | 28.2% | 112 |
| 39 | Composite Components (Czechia)Choceň |
#6,213 | 7.7 | 21.2% | 82 |
| 40 | Czech Academy of Sciences, Institute of Atmospheric PhysicsPrague |
#6,278 | 7.6 | 19.2% | 92 |
| 41 | Silesian University in OpavaOpava |
#6,385 | 7.4 | 22.1% | 168 |
| 42 | Czech Academy of Sciences, Institute of Chemical Process FundamentalsPrague |
#6,474 | 7.3 | 9.4% | 126 |
| 43 | Czech Academy of Sciences, Institute of Photonics and ElectronicsPrague |
#6,578 | 7.1 | 6.6% | 100 |
| 44 | Czech Academy of Sciences, Institute of Analytical ChemistryBrno |
#6,786 | 6.8 | 10.4% | 95 |
| 45 | Research Centre RezPrague |
#6,900 | 6.6 | 10.2% | 128 |
| 46 | Prague University of Economics and BusinessPrague |
#7,098 | 6.3 | 17.0% | 176 |
| 47 | Advanced Engineering (Czechia)Prague |
#7,520 | 5.7 | 9.1% | 124 |
| 48 | Institute of EndocrinologyPrague |
#7,730 | 5.4 | 4.2% | 415 |
| 49 | Institute of Technology and BusinessČeské Budějovice |
#7,968 | 5.1 | 12.8% | 148 |
| 50 | Czech Academy of Sciences, Institute of Computer SciencePrague |
#8,159 | 4.8 | 10.0% | 188 |
| 51 | Czech Academy of Sciences, Institute of GeophysicsPrague |
#8,194 | 4.8 | 13.5% | 125 |
| 52 | Czech Academy of Sciences, Institute of Rock Structure and MechanicsPrague |
#8,394 | 4.5 | 16.6% | 85 |
| 53 | Český metrologický institutBrno |
#8,637 | 4.2 | 7.5% | 69 |
| 54 | Czech Academy of Sciences, Institute of Information Theory and AutomationPrague |
#8,778 | 4.1 | 8.9% | 125 |
| 55 | Czech Academy of Sciences, Institute of MicrobiologyPrague |
#8,855 | 4.0 | 13.9% | 112 |
| 56 | Institute of Hydrobiology, Biology Centre, Academy of Sciences of the Czech RepublicČeské Budějovice |
#9,187 | 3.6 | 25.3% | 76 |
| 57 | Institute of Aviation MedicinePrague |
#9,224 | 3.5 | 8.6% | 89 |
| 58 | Czech Academy of Sciences, Biology CentreČeské Budějovice |
#9,290 | 3.5 | 22.7% | 98 |
| 59 | Technology Centre PraguePrague |
#9,317 | 3.4 | 8.8% | 67 |
| 60 | Czech Academy of Sciences, Institute of BiotechnologyPrague |
#9,339 | 3.4 | 12.5% | 61 |